Transcript: ENST00000520572.2 LNCOC1-201

Description

lncRNA associated with ovarian cancer 1 [Source:HGNC Symbol;Acc:HGNC:53947]

Gene Synonyms

LNC-OC1

Location

About this transcript

This transcript has 3 exons, is associated with 9844 variant alleles and maps to 195 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000669349.1	LNCOC1-206	4194	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENST00000520572.2	LNCOC1-201	5712	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000663158.1	LNCOC1-204	4254	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000665898.1	LNCOC1-205	3767	No protein	-	lncRNA	-	-
ENST00000662059.1	LNCOC1-203	2868	No protein	-	lncRNA	-	-
ENST00000654797.1	LNCOC1-202	2486	No protein	-	lncRNA	-	-
ENST00000689400.2	LNCOC1-208	1533	No protein	-	lncRNA	-	-
ENST00000701145.1	LNCOC1-209	1037	No protein	-	lncRNA	-	-
ENST00000687725.1	LNCOC1-207	872	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 5,712 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000520572.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.