Transcript: ENST00000519557.3 LINC01603-202

Description

long intergenic non-protein coding RNA 1603 [Source:HGNC Symbol;Acc:HGNC:51652]

Location

Chromosome 8: 69,425,622-69,448,281 reverse strand.

About this transcript

This transcript has 4 exons and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSG00000253479.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000720959.1	LINC01603-206	1032	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000720965.1	LINC01603-212	1873	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000517343.7	LINC01603-201	1649	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000720960.1	LINC01603-207	1446	No protein	-	lncRNA	-	-
ENST00000653348.2	LINC01603-203	1313	No protein	-	lncRNA	-	-
ENST00000720961.1	LINC01603-208	1111	No protein	-	lncRNA	-	-
ENST00000720962.1	LINC01603-209	1089	No protein	-	lncRNA	-	-
ENST00000666807.1	LINC01603-205	797	No protein	-	lncRNA	-	-
ENST00000519557.3	LINC01603-202	749	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000720963.1	LINC01603-210	678	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659866.2	LINC01603-204	653	No protein	-	lncRNA	-	-
ENST00000720966.1	LINC01603-213	640	No protein	-	lncRNA	-	-
ENST00000720964.1	LINC01603-211	601	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 749 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000519557.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000519557.3 LINC01603-202

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Transcript: ENST00000519557.3 LINC01603-202

Summary

About Us

Get help

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