Human (GRCh38.p14)
Description

LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17017]

Gene Synonyms

YDR378C

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 10554 variant alleles and maps to 225 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000296581.11LSM6-201222680aaENSP00000296581.5
 
Protein coding
CCDS3767P62312 NM_007080.3MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000502781.5LSM6-202135280aaENSP00000422392.1
 
Protein coding
CCDS3767P62312 -GENCODE basicAPPRIS P1TSL:1
ENST00000649747.1LSM6-20845480aaENSP00000497311.1
 
Protein coding
CCDS3767P62312 -GENCODE basicAPPRIS P1
ENST00000504181.1LSM6-20454980aaENSP00000420929.1
 
Nonsense mediated decay
CCDS3767P62312 -TSL:2
ENST00000515311.5LSM6-20754580aaENSP00000427036.1
 
Nonsense mediated decay
CCDS3767P62312 -TSL:4
ENST00000503982.1LSM6-203820No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000510331.1LSM6-206561No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000507449.1LSM6-205371No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 5, Coding exons: 3, Transcript length: 545 bps, Translation length: 80 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62312

CCDS

This transcript is a member of the Human CCDS set: CCDS3767

Transcript Support Level (TSL)

TSL:4

Version

ENST00000515311.5

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.