Transcript: ENST00000512260.5

Description

novel transcript

Location

Chromosome 5: 176,176,520-176,185,180 reverse strand.

About this transcript

This transcript has 4 exons and maps to 437 oligo probes.

Gene

This transcript is a product of gene ENSG00000283235.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000510850.2	-	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000512260.5	-	534	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000790488.1	-	376	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000790628.1	-	2052	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000508056.5	-	1612	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000790643.1	-	1563	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790617.1	-	1542	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790622.1	-	1509	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790624.1	-	1423	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790645.1	-	1413	No protein	-	lncRNA	-	-
ENST00000790616.1	-	1412	No protein	-	lncRNA	-	-
ENST00000790626.1	-	1412	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790625.1	-	1348	No protein	-	lncRNA	-	-
ENST00000790631.1	-	1332	No protein	-	lncRNA	-	-
ENST00000790618.1	-	1323	No protein	-	lncRNA	-	-
ENST00000790619.1	-	1275	No protein	-	lncRNA	-	-
ENST00000790627.1	-	1273	No protein	-	lncRNA	-	-
ENST00000790634.1	-	1244	No protein	-	lncRNA	-	-
ENST00000790650.1	-	1232	No protein	-	lncRNA	-	-
ENST00000790621.1	-	1199	No protein	-	lncRNA	-	-
ENST00000790652.1	-	1195	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790623.1	-	1188	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790653.1	-	1135	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790708.1	-	1127	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790692.1	-	1113	No protein	-	lncRNA	-	-
ENST00000658968.1	-	1111	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790646.1	-	1088	No protein	-	lncRNA	-	-
ENST00000790620.1	-	1060	No protein	-	lncRNA	-	-
ENST00000790704.1	-	1041	No protein	-	lncRNA	-	-
ENST00000790648.1	-	1037	No protein	-	lncRNA	-	-
ENST00000790655.1	-	999	No protein	-	lncRNA	-	-
ENST00000790633.1	-	969	No protein	-	lncRNA	-	-
ENST00000790637.1	-	969	No protein	-	lncRNA	-	-
ENST00000790640.1	-	962	No protein	-	lncRNA	-	-
ENST00000790677.1	-	956	No protein	-	lncRNA	-	-
ENST00000790672.1	-	950	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790649.1	-	941	No protein	-	lncRNA	-	-
ENST00000790660.1	-	939	No protein	-	lncRNA	-	-
ENST00000790654.1	-	930	No protein	-	lncRNA	-	-
ENST00000790665.1	-	925	No protein	-	lncRNA	-	-
ENST00000790681.1	-	919	No protein	-	lncRNA	-	-
ENST00000790644.1	-	912	No protein	-	lncRNA	-	-
ENST00000790629.1	-	909	No protein	-	lncRNA	-	-
ENST00000790670.1	-	906	No protein	-	lncRNA	-	-
ENST00000790669.1	-	892	No protein	-	lncRNA	-	-
ENST00000790630.1	-	887	No protein	-	lncRNA	-	-
ENST00000790668.1	-	885	No protein	-	lncRNA	-	-
ENST00000790680.1	-	880	No protein	-	lncRNA	-	-
ENST00000790642.1	-	875	No protein	-	lncRNA	-	-
ENST00000790675.1	-	875	No protein	-	lncRNA	-	-
ENST00000790688.1	-	864	No protein	-	lncRNA	-	-
ENST00000790694.1	-	858	No protein	-	lncRNA	-	-
ENST00000790656.1	-	857	No protein	-	lncRNA	-	-
ENST00000790659.1	-	848	No protein	-	lncRNA	-	-
ENST00000790674.1	-	848	No protein	-	lncRNA	-	-
ENST00000790683.1	-	845	No protein	-	lncRNA	-	-
ENST00000790696.1	-	842	No protein	-	lncRNA	-	-
ENST00000790684.1	-	834	No protein	-	lncRNA	-	-
ENST00000790666.1	-	809	No protein	-	lncRNA	-	-
ENST00000790678.1	-	809	No protein	-	lncRNA	-	-
ENST00000790693.1	-	803	No protein	-	lncRNA	-	-
ENST00000790641.1	-	799	No protein	-	lncRNA	-	-
ENST00000790638.1	-	795	No protein	-	lncRNA	-	-
ENST00000790673.1	-	788	No protein	-	lncRNA	-	-
ENST00000790647.1	-	780	No protein	-	lncRNA	-	-
ENST00000790657.1	-	778	No protein	-	lncRNA	-	-
ENST00000790685.1	-	763	No protein	-	lncRNA	-	-
ENST00000790661.1	-	756	No protein	-	lncRNA	-	-
ENST00000790663.1	-	756	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790687.1	-	744	No protein	-	lncRNA	-	-
ENST00000790676.1	-	738	No protein	-	lncRNA	-	-
ENST00000790682.1	-	701	No protein	-	lncRNA	-	-
ENST00000790664.1	-	689	No protein	-	lncRNA	-	-
ENST00000510155.2	-	673	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000790667.1	-	670	No protein	-	lncRNA	-	-
ENST00000790709.1	-	669	No protein	-	lncRNA	-	-
ENST00000790689.1	-	649	No protein	-	lncRNA	-	-
ENST00000790695.1	-	643	No protein	-	lncRNA	-	-
ENST00000790679.1	-	640	No protein	-	lncRNA	-	-
ENST00000790636.1	-	630	No protein	-	lncRNA	-	-
ENST00000790662.1	-	626	No protein	-	lncRNA	-	-
ENST00000790658.1	-	619	No protein	-	lncRNA	-	-
ENST00000790710.1	-	602	No protein	-	lncRNA	-	-
ENST00000790707.1	-	588	No protein	-	lncRNA	-	-
ENST00000790706.1	-	574	No protein	-	lncRNA	-	-
ENST00000790632.1	-	569	No protein	-	lncRNA	-	-
ENST00000790700.1	-	563	No protein	-	lncRNA	-	-
ENST00000790635.1	-	559	No protein	-	lncRNA	-	-
ENST00000790686.1	-	548	No protein	-	lncRNA	-	-
ENST00000790697.1	-	544	No protein	-	lncRNA	-	-
ENST00000790691.1	-	533	No protein	-	lncRNA	-	-
ENST00000790701.1	-	528	No protein	-	lncRNA	-	-
ENST00000790639.1	-	521	No protein	-	lncRNA	-	-
ENST00000790699.1	-	521	No protein	-	lncRNA	-	-
ENST00000790671.1	-	516	No protein	-	lncRNA	-	-
ENST00000790690.1	-	411	No protein	-	lncRNA	-	-
ENST00000790703.1	-	409	No protein	-	lncRNA	-	-
ENST00000790698.1	-	400	No protein	-	lncRNA	-	-
ENST00000790705.1	-	393	No protein	-	lncRNA	-	-
ENST00000790491.1	-	391	No protein	-	lncRNA	-	-
ENST00000790651.1	-	370	No protein	-	lncRNA	-	-
ENST00000790702.1	-	362	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 534 bps,

Transcript Support Level (TSL)

TSL:4

Version

ENST00000512260.5

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000512260.5

Summary

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Transcript: ENST00000512260.5

Summary

About Us

Get help

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