Transcript: ENST00000508732.6 LETR1-201

Description

lymphatic endothelial transcriptional regulator lncRNA 1 [Source:HGNC Symbol;Acc:HGNC:49597]

Gene Synonyms

LINC01197

Location

Chromosome 15: 95,279,284-95,327,100 reverse strand.

About this transcript

This transcript has 4 exons and maps to 234 oligo probes.

Gene

This transcript is a product of gene ENSG00000248441.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000698309.1	LETR1-235	3003	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000555332.7	LETR1-202	4734	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000698232.1	LETR1-229	3553	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661153.1	LETR1-216	3053	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655274.2	LETR1-208	2987	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659107.1	LETR1-213	2785	No protein	-	lncRNA	-	-
ENST00000698249.1	LETR1-230	2580	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000653272.1	LETR1-206	2539	No protein	-	lncRNA	-	-
ENST00000670739.1	LETR1-224	2369	No protein	-	lncRNA	-	-
ENST00000670445.1	LETR1-223	2358	No protein	-	lncRNA	-	-
ENST00000661491.1	LETR1-217	2340	No protein	-	lncRNA	-	-
ENST00000654052.2	LETR1-207	2337	No protein	-	lncRNA	-	-
ENST00000665255.1	LETR1-222	2264	No protein	-	lncRNA	-	-
ENST00000614853.2	LETR1-205	2164	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000660741.1	LETR1-215	2067	No protein	-	lncRNA	-	-
ENST00000658041.2	LETR1-210	2054	No protein	-	lncRNA	-	-
ENST00000556899.2	LETR1-203	2052	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000703417.1	LETR1-245	1986	No protein	-	lncRNA	-	-
ENST00000698230.1	LETR1-227	1934	No protein	-	lncRNA	-	-
ENST00000698253.1	LETR1-234	1546	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000698250.1	LETR1-231	1498	No protein	-	lncRNA	-	-
ENST00000611265.5	LETR1-204	1462	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000664421.2	LETR1-221	1438	No protein	-	lncRNA	-	-
ENST00000698251.1	LETR1-232	1404	No protein	-	lncRNA	-	-
ENST00000698312.1	LETR1-238	1385	No protein	-	lncRNA	-	-
ENST00000508732.6	LETR1-201	1384	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000698229.1	LETR1-226	1377	No protein	-	lncRNA	-	-
ENST00000840800.1	LETR1-248	1346	No protein	-	lncRNA	-	-
ENST00000698311.1	LETR1-237	1308	No protein	-	lncRNA	-	-
ENST00000840799.1	LETR1-247	1232	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701331.1	LETR1-243	1145	No protein	-	lncRNA	-	-
ENST00000663436.1	LETR1-219	1140	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000689353.2	LETR1-225	1136	No protein	-	lncRNA	-	-
ENST00000698252.1	LETR1-233	1120	No protein	-	lncRNA	-	-
ENST00000698310.1	LETR1-236	1119	No protein	-	lncRNA	-	-
ENST00000659002.1	LETR1-212	1102	No protein	-	lncRNA	-	-
ENST00000698313.1	LETR1-239	1082	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662295.2	LETR1-218	1077	No protein	-	lncRNA	-	-
ENST00000658123.1	LETR1-211	971	No protein	-	lncRNA	-	-
ENST00000659343.2	LETR1-214	931	No protein	-	lncRNA	-	-
ENST00000698315.1	LETR1-241	929	No protein	-	lncRNA	-	-
ENST00000701654.1	LETR1-244	847	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664127.1	LETR1-220	835	No protein	-	lncRNA	-	-
ENST00000698314.1	LETR1-240	816	No protein	-	lncRNA	-	-
ENST00000656019.1	LETR1-209	815	No protein	-	lncRNA	-	-
ENST00000698316.1	LETR1-242	789	No protein	-	lncRNA	-	-
ENST00000840798.1	LETR1-246	702	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000698231.1	LETR1-228	674	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,384 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000508732.6

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000508732.6 LETR1-201

Summary

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Transcript: ENST00000508732.6 LETR1-201

Summary

About Us

Get help

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