Transcript: ENST00000507890.2 LINC01331-203

Description

long intergenic non-protein coding RNA 1331 [Source:HGNC Symbol;Acc:HGNC:50538]

Location

Chromosome 5: 74,302,914-74,321,255 reverse strand.

About this transcript

This transcript has 7 exons and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSG00000248673.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000663633.1	LINC01331-206	1785	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000506612.2	LINC01331-201	2224	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000657957.1	LINC01331-205	1724	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000830066.1	LINC01331-223	1698	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000830055.1	LINC01331-212	1583	No protein	-	lncRNA	-	-
ENST00000830053.1	LINC01331-210	1555	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000830075.1	LINC01331-232	1514	No protein	-	lncRNA	-	-
ENST00000830067.1	LINC01331-224	1500	No protein	-	lncRNA	-	-
ENST00000830057.1	LINC01331-214	1496	No protein	-	lncRNA	-	-
ENST00000830087.1	LINC01331-244	1452	No protein	-	lncRNA	-	-
ENST00000651573.1	LINC01331-204	1408	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000830058.1	LINC01331-215	1380	No protein	-	lncRNA	-	-
ENST00000830085.1	LINC01331-242	1359	No protein	-	lncRNA	-	-
ENST00000715758.1	LINC01331-208	1344	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000507781.2	LINC01331-202	1317	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000830071.1	LINC01331-228	1250	No protein	-	lncRNA	-	-
ENST00000507890.2	LINC01331-203	1249	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000830056.1	LINC01331-213	1249	No protein	-	lncRNA	-	-
ENST00000830070.1	LINC01331-227	1245	No protein	-	lncRNA	-	-
ENST00000830069.1	LINC01331-226	1220	No protein	-	lncRNA	-	-
ENST00000830059.1	LINC01331-216	1216	No protein	-	lncRNA	-	-
ENST00000830078.1	LINC01331-235	1212	No protein	-	lncRNA	-	-
ENST00000830076.1	LINC01331-233	1110	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000830077.1	LINC01331-234	1104	No protein	-	lncRNA	-	-
ENST00000830054.1	LINC01331-211	1042	No protein	-	lncRNA	-	-
ENST00000830079.1	LINC01331-236	1009	No protein	-	lncRNA	-	-
ENST00000830082.1	LINC01331-239	979	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000850665.1	LINC01331-248	958	No protein	-	lncRNA	-	-
ENST00000830084.1	LINC01331-241	934	No protein	-	lncRNA	-	-
ENST00000715757.1	LINC01331-207	897	No protein	-	lncRNA	-	-
ENST00000830052.1	LINC01331-209	893	No protein	-	lncRNA	-	-
ENST00000830088.1	LINC01331-245	893	No protein	-	lncRNA	-	-
ENST00000830065.1	LINC01331-222	889	No protein	-	lncRNA	-	-
ENST00000830074.1	LINC01331-231	739	No protein	-	lncRNA	-	-
ENST00000830068.1	LINC01331-225	727	No protein	-	lncRNA	-	-
ENST00000830060.1	LINC01331-217	651	No protein	-	lncRNA	-	-
ENST00000830083.1	LINC01331-240	638	No protein	-	lncRNA	-	-
ENST00000830080.1	LINC01331-237	618	No protein	-	lncRNA	-	-
ENST00000830073.1	LINC01331-230	602	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000830063.1	LINC01331-220	593	No protein	-	lncRNA	-	-
ENST00000830072.1	LINC01331-229	591	No protein	-	lncRNA	-	-
ENST00000830062.1	LINC01331-219	587	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000830090.1	LINC01331-247	558	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000830089.1	LINC01331-246	532	No protein	-	lncRNA	-	-
ENST00000830081.1	LINC01331-238	481	No protein	-	lncRNA	-	-
ENST00000830061.1	LINC01331-218	476	No protein	-	lncRNA	-	-
ENST00000830064.1	LINC01331-221	475	No protein	-	lncRNA	-	-
ENST00000830086.1	LINC01331-243	447	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 1,249 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000507890.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000507890.2 LINC01331-203

Summary

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Transcript: ENST00000507890.2 LINC01331-203

Summary

About Us

Get help

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