Transcript: ENST00000505371.2 LINC02198-203

Description

long intergenic non-protein coding RNA 2198 [Source:HGNC Symbol;Acc:HGNC:53064]

Location

Chromosome 5: 68,970,692-69,029,927 reverse strand.

About this transcript

This transcript has 2 exons and maps to 188 oligo probes.

Gene

This transcript is a product of gene ENSG00000249352.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000843732.1	LINC02198-214	828	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000503268.2	LINC02198-201	1761	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000843743.1	LINC02198-225	1679	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654078.1	LINC02198-204	1646	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000843741.1	LINC02198-223	1563	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000843745.1	LINC02198-227	1485	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717717.1	LINC02198-213	1451	No protein	-	lncRNA	-	-
ENST00000843744.1	LINC02198-226	1330	No protein	-	lncRNA	-	-
ENST00000717716.1	LINC02198-212	1309	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000692586.1	LINC02198-208	1213	No protein	-	lncRNA	-	-
ENST00000701175.1	LINC02198-210	1147	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668535.3	LINC02198-205	1133	No protein	-	lncRNA	-	-
ENST00000696797.1	LINC02198-209	993	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701796.2	LINC02198-211	987	No protein	-	lncRNA	-	-
ENST00000843740.1	LINC02198-222	913	No protein	-	lncRNA	-	-
ENST00000843735.1	LINC02198-217	893	No protein	-	lncRNA	-	-
ENST00000504280.1	LINC02198-202	810	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000843749.1	LINC02198-231	807	No protein	-	lncRNA	-	-
ENST00000843733.1	LINC02198-215	803	No protein	-	lncRNA	-	-
ENST00000843738.1	LINC02198-220	782	No protein	-	lncRNA	-	-
ENST00000692118.3	LINC02198-207	765	No protein	-	lncRNA	-	-
ENST00000843734.1	LINC02198-216	749	No protein	-	lncRNA	-	-
ENST00000690326.3	LINC02198-206	647	No protein	-	lncRNA	-	-
ENST00000843737.1	LINC02198-219	617	No protein	-	lncRNA	-	-
ENST00000843746.1	LINC02198-228	547	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000505371.2	LINC02198-203	526	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000843736.1	LINC02198-218	455	No protein	-	lncRNA	-	-
ENST00000843748.1	LINC02198-230	441	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000843742.1	LINC02198-224	423	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000843747.1	LINC02198-229	297	No protein	-	lncRNA	-	-
ENST00000843739.1	LINC02198-221	236	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 526 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000505371.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000505371.2 LINC02198-203

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Transcript: ENST00000505371.2 LINC02198-203

Summary

About Us

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