Transcript: ENST00000503539.8 LINC01094-202

Description

long intergenic non-protein coding RNA 1094 [Source:HGNC Symbol;Acc:HGNC:49219]

Gene Synonyms

CTEPHA1

Location

Chromosome 4: 78,645,886-78,682,688 forward strand.

About this transcript

This transcript has 4 exons and maps to 509 oligo probes.

Gene

This transcript is a product of gene ENSG00000251442.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000778503.1	LINC01094-222	1691	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000671622.2	LINC01094-218	2989	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778523.1	LINC01094-242	2647	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000503259.6	LINC01094-201	2560	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000503539.8	LINC01094-202	2509	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000507802.6	LINC01094-204	2485	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000668669.1	LINC01094-216	2476	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656991.2	LINC01094-211	2393	No protein	-	lncRNA	-	-
ENST00000663250.2	LINC01094-213	2383	No protein	-	lncRNA	-	-
ENST00000504675.7	LINC01094-203	2336	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000667455.1	LINC01094-215	2266	No protein	-	lncRNA	-	-
ENST00000512322.2	LINC01094-205	2225	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000652918.1	LINC01094-207	2207	No protein	-	lncRNA	-	-
ENST00000687467.2	LINC01094-219	2119	No protein	-	lncRNA	-	-
ENST00000514130.6	LINC01094-206	2095	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000670146.2	LINC01094-217	1967	No protein	-	lncRNA	-	-
ENST00000666953.1	LINC01094-214	1846	No protein	-	lncRNA	-	-
ENST00000701241.1	LINC01094-220	1831	No protein	-	lncRNA	-	-
ENST00000654792.1	LINC01094-210	1778	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654343.1	LINC01094-209	1680	No protein	-	lncRNA	-	-
ENST00000778506.1	LINC01094-225	1536	No protein	-	lncRNA	-	-
ENST00000778512.1	LINC01094-231	1490	No protein	-	lncRNA	-	-
ENST00000661741.1	LINC01094-212	1480	No protein	-	lncRNA	-	-
ENST00000701906.2	LINC01094-221	1300	No protein	-	lncRNA	-	-
ENST00000653916.2	LINC01094-208	1180	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778521.1	LINC01094-240	1158	No protein	-	lncRNA	-	-
ENST00000778519.1	LINC01094-238	1153	No protein	-	lncRNA	-	-
ENST00000778514.1	LINC01094-233	1151	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778513.1	LINC01094-232	1128	No protein	-	lncRNA	-	-
ENST00000778520.1	LINC01094-239	1094	No protein	-	lncRNA	-	-
ENST00000778505.1	LINC01094-224	1070	No protein	-	lncRNA	-	-
ENST00000778516.1	LINC01094-235	1033	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778517.1	LINC01094-236	1030	No protein	-	lncRNA	-	-
ENST00000778515.1	LINC01094-234	968	No protein	-	lncRNA	-	-
ENST00000778504.1	LINC01094-223	854	No protein	-	lncRNA	-	-
ENST00000778522.1	LINC01094-241	726	No protein	-	lncRNA	-	-
ENST00000778518.1	LINC01094-237	611	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778511.1	LINC01094-230	601	No protein	-	lncRNA	-	-
ENST00000778509.1	LINC01094-228	598	No protein	-	lncRNA	-	-
ENST00000778508.1	LINC01094-227	526	No protein	-	lncRNA	-	-
ENST00000778510.1	LINC01094-229	478	No protein	-	lncRNA	-	-
ENST00000778507.1	LINC01094-226	441	No protein	-	lncRNA	-	-
ENST00000778524.1	LINC01094-243	257	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,509 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000503539.8

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000503539.8 LINC01094-202

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Transcript: ENST00000503539.8 LINC01094-202

Summary

About Us

Get help

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