Transcript: ENST00000500616.3 LINC02142-201

Description

long intergenic non-protein coding RNA 2142 [Source:HGNC Symbol;Acc:HGNC:53002]

Location

Chromosome 5: 7,373,117-7,379,808 forward strand.

About this transcript

This transcript has 2 exons and maps to 109 oligo probes.

Gene

This transcript is a product of gene ENSG00000223597.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000715908.1	LINC02142-208	640	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000650671.1	LINC02142-205	1339	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655220.1	LINC02142-206	1189	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657298.1	LINC02142-207	1107	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838842.1	LINC02142-215	1092	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838841.1	LINC02142-214	955	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773890.1	LINC02142-210	950	No protein	-	lncRNA	-	-
ENST00000838847.1	LINC02142-220	882	No protein	-	lncRNA	-	-
ENST00000650000.1	LINC02142-204	860	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838840.1	LINC02142-213	790	No protein	-	lncRNA	-	-
ENST00000838843.1	LINC02142-216	753	No protein	-	lncRNA	-	-
ENST00000838850.1	LINC02142-223	753	No protein	-	lncRNA	-	-
ENST00000773891.1	LINC02142-211	748	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838848.1	LINC02142-221	715	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838844.1	LINC02142-217	662	No protein	-	lncRNA	-	-
ENST00000838839.1	LINC02142-212	619	No protein	-	lncRNA	-	-
ENST00000838845.1	LINC02142-218	608	No protein	-	lncRNA	-	-
ENST00000500616.3	LINC02142-201	595	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000504494.1	LINC02142-202	564	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000838849.1	LINC02142-222	554	No protein	-	lncRNA	-	-
ENST00000838853.1	LINC02142-226	551	No protein	-	lncRNA	-	-
ENST00000838851.1	LINC02142-224	550	No protein	-	lncRNA	-	-
ENST00000838854.1	LINC02142-227	546	No protein	-	lncRNA	-	-
ENST00000838852.1	LINC02142-225	521	No protein	-	lncRNA	-	-
ENST00000715909.1	LINC02142-209	512	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838846.1	LINC02142-219	429	No protein	-	lncRNA	-	-
ENST00000512746.1	LINC02142-203	332	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 595 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000500616.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000500616.3 LINC02142-201

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Transcript: ENST00000500616.3 LINC02142-201

Summary

About Us

Get help

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