Transcript: ENST00000497933.3 LRRC55-201

Description

leucine rich repeat containing 55 [Source:HGNC Symbol;Acc:HGNC:32324]

Gene Synonyms

FLJ45686

Location

Chromosome 11: 57,181,953-57,191,717 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 17 domains and features, is associated with 4730 variant alleles and maps to 256 oligo probes.

Gene

This transcript is a product of gene ENSG00000183908.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000497933.3	LRRC55-201	5204	298aa	ENSP00000419542.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31539	Q6ZSA7	NM_001005210.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000652194.1	LRRC55-202	5407	341aa	ENSP00000498533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494C0H1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 5,204 bps, Translation length: 298 residues

MANE

This MANE Select transcript contains ENSP00000419542 and matches to NM_001005210.4 and NP_001005210.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZSA7

CCDS

This transcript is a member of the Human CCDS set: CCDS31539

Transcript Support Level (TSL)

TSL:1

Version

ENST00000497933.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000497933.3 LRRC55-201

Summary

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Transcript: ENST00000497933.3 LRRC55-201

Summary

About Us

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