Transcript: ENST00000492416.3 LINC02031-201

Description

long intergenic non-protein coding RNA 2031 [Source:HGNC Symbol;Acc:HGNC:52865]

Location

Chromosome 3: 182,644,214-182,673,422 forward strand.

About this transcript

This transcript has 6 exons, is associated with 13545 variant alleles and maps to 189 oligo probes.

Gene

This transcript is a product of gene ENSG00000238837.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000492416.3	LINC02031-201	849	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000799963.1	LINC02031-202	1664	No protein	-	lncRNA	-	-
ENST00000799964.1	LINC02031-203	1435	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799970.1	LINC02031-209	1164	No protein	-	lncRNA	-	-
ENST00000799966.1	LINC02031-205	1058	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799967.1	LINC02031-206	934	No protein	-	lncRNA	-	-
ENST00000799972.1	LINC02031-211	844	No protein	-	lncRNA	-	-
ENST00000799971.1	LINC02031-210	813	No protein	-	lncRNA	-	-
ENST00000799969.1	LINC02031-208	759	No protein	-	lncRNA	-	-
ENST00000799968.1	LINC02031-207	713	No protein	-	lncRNA	-	-
ENST00000799973.1	LINC02031-212	604	No protein	-	lncRNA	-	-
ENST00000799965.1	LINC02031-204	424	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 849 bps,

Transcript Support Level (TSL)

TSL:4

Version

ENST00000492416.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000492416.3 LINC02031-201

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Transcript: ENST00000492416.3 LINC02031-201

Summary

About Us

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