Transcript: ENST00000479991.1 RTL5-201

Description

retrotransposon Gag like 5 [Source:HGNC Symbol;Acc:HGNC:29430]

Gene Synonyms

KIAA2001, MAR5, MART5, RGAG4, SIRH8

Location

Chromosome X: 72,127,110-72,131,901 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 1932 variant alleles and maps to 285 oligo probes.

Gene

This transcript is a product of gene ENSG00000242732.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000609883.3	RTL5-202	4806	569aa	ENSP00000476792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55446	Q5HYW3	NM_001405151.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000479991.1	RTL5-201	4339	569aa	ENSP00000418667.1	Nonsense mediated decay	CCDS55446	Q5HYW3	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 4,339 bps, Translation length: 569 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5HYW3

CCDS

This transcript is a member of the Human CCDS set: CCDS55446

Transcript Support Level (TSL)

TSL:1

Version

ENST00000479991.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000479991.1 RTL5-201

Summary

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Transcript: ENST00000479991.1 RTL5-201

Summary

About Us

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