Transcript: ENST00000474769.7 NECTIN3-AS1-204

Description

NECTIN3 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40813]

Gene Synonyms

PVRL3-AS1

Location

Chromosome 3: 110,892,123-111,071,586 reverse strand.

About this transcript

This transcript has 4 exons and maps to 350 oligo probes.

Gene

This transcript is a product of gene ENSG00000242242.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000803769.1	NECTIN3-AS1-211	578	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000803802.1	NECTIN3-AS1-244	2438	No protein	-	lncRNA	-	-
ENST00000803801.1	NECTIN3-AS1-243	2031	No protein	-	lncRNA	-	-
ENST00000803776.1	NECTIN3-AS1-218	2023	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000383686.4	NECTIN3-AS1-201	1916	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000803784.1	NECTIN3-AS1-226	1835	No protein	-	lncRNA	-	-
ENST00000485473.2	NECTIN3-AS1-206	1715	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000476301.6	NECTIN3-AS1-205	1699	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000803770.1	NECTIN3-AS1-212	1656	No protein	-	lncRNA	-	-
ENST00000803772.1	NECTIN3-AS1-214	1604	No protein	-	lncRNA	-	-
ENST00000803777.1	NECTIN3-AS1-219	1535	No protein	-	lncRNA	-	-
ENST00000803800.1	NECTIN3-AS1-242	1533	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000474769.7	NECTIN3-AS1-204	1477	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000803792.1	NECTIN3-AS1-234	1468	No protein	-	lncRNA	-	-
ENST00000803796.1	NECTIN3-AS1-238	1458	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000803778.1	NECTIN3-AS1-220	1390	No protein	-	lncRNA	-	-
ENST00000803803.1	NECTIN3-AS1-245	1335	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000803795.1	NECTIN3-AS1-237	1325	No protein	-	lncRNA	-	-
ENST00000691789.3	NECTIN3-AS1-210	1300	No protein	-	lncRNA	-	-
ENST00000803797.1	NECTIN3-AS1-239	1261	No protein	-	lncRNA	-	-
ENST00000803794.1	NECTIN3-AS1-236	1245	No protein	-	lncRNA	-	-
ENST00000803771.1	NECTIN3-AS1-213	1162	No protein	-	lncRNA	-	-
ENST00000690883.2	NECTIN3-AS1-209	1071	No protein	-	lncRNA	-	-
ENST00000803785.1	NECTIN3-AS1-227	1027	No protein	-	lncRNA	-	-
ENST00000803789.1	NECTIN3-AS1-231	1018	No protein	-	lncRNA	-	-
ENST00000803790.1	NECTIN3-AS1-232	1018	No protein	-	lncRNA	-	-
ENST00000803782.1	NECTIN3-AS1-224	966	No protein	-	lncRNA	-	-
ENST00000803774.1	NECTIN3-AS1-216	949	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000803798.1	NECTIN3-AS1-240	942	No protein	-	lncRNA	-	-
ENST00000803779.1	NECTIN3-AS1-221	924	No protein	-	lncRNA	-	-
ENST00000803780.1	NECTIN3-AS1-222	911	No protein	-	lncRNA	-	-
ENST00000803799.1	NECTIN3-AS1-241	900	No protein	-	lncRNA	-	-
ENST00000491709.6	NECTIN3-AS1-207	896	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000803791.1	NECTIN3-AS1-233	876	No protein	-	lncRNA	-	-
ENST00000803793.1	NECTIN3-AS1-235	840	No protein	-	lncRNA	-	-
ENST00000803781.1	NECTIN3-AS1-223	826	No protein	-	lncRNA	-	-
ENST00000803804.1	NECTIN3-AS1-246	819	No protein	-	lncRNA	-	-
ENST00000803783.1	NECTIN3-AS1-225	810	No protein	-	lncRNA	-	-
ENST00000803805.1	NECTIN3-AS1-247	690	No protein	-	lncRNA	-	-
ENST00000803775.1	NECTIN3-AS1-217	678	No protein	-	lncRNA	-	-
ENST00000803788.1	NECTIN3-AS1-230	677	No protein	-	lncRNA	-	-
ENST00000467426.5	NECTIN3-AS1-203	664	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000690584.1	NECTIN3-AS1-208	625	No protein	-	lncRNA	-	-
ENST00000803773.1	NECTIN3-AS1-215	516	No protein	-	lncRNA	-	-
ENST00000803787.1	NECTIN3-AS1-229	452	No protein	-	lncRNA	-	-
ENST00000463025.1	NECTIN3-AS1-202	413	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000803786.1	NECTIN3-AS1-228	381	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,477 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000474769.7

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000474769.7 NECTIN3-AS1-204

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Transcript: ENST00000474769.7 NECTIN3-AS1-204

Summary

About Us

Get help

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