Transcript: ENST00000469440.5 SNTN-202

Description

sentan, cilia apical structure protein [Source:HGNC Symbol;Acc:HGNC:33706]

Gene Synonyms

FLJ44379, S100AL

Location

Chromosome 3: 63,652,679-63,664,060 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 5018 variant alleles and maps to 242 oligo probes.

Gene

This transcript is a product of gene ENSG00000188817.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000343837.8	SNTN-201	1574	147aa	ENSP00000341442.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33779	A6NMZ2	NM_001080537.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000496807.1	SNTN-203	3746	115aa	ENSP00000419971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JXY5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000469440.5	SNTN-202	508	166aa	ENSP00000420078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JRU3	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 508 bps, Translation length: 166 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000469440.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000469440.5 SNTN-202

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Transcript: ENST00000469440.5 SNTN-202

Summary

About Us

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