Transcript: ENST00000468762.3 XACT-201

Description

X active specific transcript [Source:HGNC Symbol;Acc:HGNC:45056]

Location

Chromosome X: 113,616,300-114,059,121 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 140697 variant alleles and maps to 123 oligo probes.

Gene

This transcript is a product of gene ENSG00000241743.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000468762.3	XACT-201	764	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000674361.1	XACT-203	347561	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649506.1	XACT-202	2292	No protein	-	lncRNA	-	-
ENST00000765940.1	XACT-212	1270	No protein	-	lncRNA	-	-
ENST00000765937.1	XACT-209	1105	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000765939.1	XACT-211	1000	No protein	-	lncRNA	-	-
ENST00000765934.1	XACT-206	976	No protein	-	lncRNA	-	-
ENST00000765936.1	XACT-208	972	No protein	-	lncRNA	-	-
ENST00000765933.1	XACT-205	821	No protein	-	lncRNA	-	-
ENST00000765932.1	XACT-204	502	No protein	-	lncRNA	-	-
ENST00000765935.1	XACT-207	360	No protein	-	lncRNA	-	-
ENST00000811426.1	XACT-213	324	No protein	-	lncRNA	-	-
ENST00000765938.1	XACT-210	303	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 764 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000468762.3

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

CAGE supported TSS [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000468762.3 XACT-201

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Transcript: ENST00000468762.3 XACT-201

Summary

About Us

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