Transcript: ENST00000462492.8 LINC00877-201

Description

long intergenic non-protein coding RNA 877 [Source:HGNC Symbol;Acc:HGNC:27706]

Location

Chromosome 3: 72,092,267-72,100,987 reverse strand.

About this transcript

This transcript has 3 exons and maps to 195 oligo probes.

Gene

This transcript is a product of gene ENSG00000241163.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000626474.3	LINC00877-211	2240	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000498432.6	LINC00877-208	3441	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000662591.1	LINC00877-216	2620	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656335.1	LINC00877-212	2615	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000468646.6	LINC00877-203	2506	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000668763.2	LINC00877-222	2070	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000690747.1	LINC00877-227	2057	No protein	-	lncRNA	-	-
ENST00000608654.6	LINC00877-209	2030	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000671527.1	LINC00877-223	1947	No protein	-	lncRNA	-	-
ENST00000469218.6	LINC00877-204	1782	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000665453.1	LINC00877-219	1755	No protein	-	lncRNA	-	-
ENST00000692617.1	LINC00877-229	1652	No protein	-	lncRNA	-	-
ENST00000666244.1	LINC00877-220	1646	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000488545.3	LINC00877-207	1470	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000811809.1	LINC00877-249	1466	No protein	-	lncRNA	-	-
ENST00000470712.2	LINC00877-205	1460	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000668168.1	LINC00877-221	1426	No protein	-	lncRNA	-	-
ENST00000811845.1	LINC00877-285	1385	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000811799.1	LINC00877-239	1350	No protein	-	lncRNA	-	-
ENST00000811834.1	LINC00877-274	1342	No protein	-	lncRNA	-	-
ENST00000811819.1	LINC00877-259	1310	No protein	-	lncRNA	-	-
ENST00000660632.1	LINC00877-214	1308	No protein	-	lncRNA	-	-
ENST00000811806.1	LINC00877-246	1291	No protein	-	lncRNA	-	-
ENST00000664410.1	LINC00877-217	1286	No protein	-	lncRNA	-	-
ENST00000702403.1	LINC00877-233	1286	No protein	-	lncRNA	-	-
ENST00000692457.2	LINC00877-228	1258	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000811818.1	LINC00877-258	1171	No protein	-	lncRNA	-	-
ENST00000811808.1	LINC00877-248	1153	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000689824.3	LINC00877-226	1132	No protein	-	lncRNA	-	-
ENST00000661666.1	LINC00877-215	1114	No protein	-	lncRNA	-	-
ENST00000811801.1	LINC00877-241	1087	No protein	-	lncRNA	-	-
ENST00000811800.1	LINC00877-240	1032	No protein	-	lncRNA	-	-
ENST00000811814.1	LINC00877-254	941	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000811826.1	LINC00877-266	911	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000811802.1	LINC00877-242	901	No protein	-	lncRNA	-	-
ENST00000693126.2	LINC00877-230	900	No protein	-	lncRNA	-	-
ENST00000811805.1	LINC00877-245	894	No protein	-	lncRNA	-	-
ENST00000811828.1	LINC00877-268	883	No protein	-	lncRNA	-	-
ENST00000811817.1	LINC00877-257	858	No protein	-	lncRNA	-	-
ENST00000811813.1	LINC00877-253	825	No protein	-	lncRNA	-	-
ENST00000664517.1	LINC00877-218	807	No protein	-	lncRNA	-	-
ENST00000811843.1	LINC00877-283	766	No protein	-	lncRNA	-	-
ENST00000811835.1	LINC00877-275	715	No protein	-	lncRNA	-	-
ENST00000811803.1	LINC00877-243	710	No protein	-	lncRNA	-	-
ENST00000701651.2	LINC00877-231	703	No protein	-	lncRNA	-	-
ENST00000811794.1	LINC00877-234	697	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658297.1	LINC00877-213	688	No protein	-	lncRNA	-	-
ENST00000811798.1	LINC00877-238	674	No protein	-	lncRNA	-	-
ENST00000811795.1	LINC00877-235	650	No protein	-	lncRNA	-	-
ENST00000686889.2	LINC00877-224	642	No protein	-	lncRNA	-	-
ENST00000687511.2	LINC00877-225	641	No protein	-	lncRNA	-	-
ENST00000811807.1	LINC00877-247	631	No protein	-	lncRNA	-	-
ENST00000811812.1	LINC00877-252	631	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000811844.1	LINC00877-284	629	No protein	-	lncRNA	-	-
ENST00000811840.1	LINC00877-280	613	No protein	-	lncRNA	-	-
ENST00000811830.1	LINC00877-270	596	No protein	-	lncRNA	-	-
ENST00000811832.1	LINC00877-272	595	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000811829.1	LINC00877-269	579	No protein	-	lncRNA	-	-
ENST00000701668.2	LINC00877-232	568	No protein	-	lncRNA	-	-
ENST00000811821.1	LINC00877-261	568	No protein	-	lncRNA	-	-
ENST00000811827.1	LINC00877-267	566	No protein	-	lncRNA	-	-
ENST00000464271.1	LINC00877-202	552	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000811811.1	LINC00877-251	538	No protein	-	lncRNA	-	-
ENST00000811833.1	LINC00877-273	535	No protein	-	lncRNA	-	-
ENST00000811831.1	LINC00877-271	521	No protein	-	lncRNA	-	-
ENST00000462492.8	LINC00877-201	515	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000811846.1	LINC00877-286	506	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000481148.5	LINC00877-206	492	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000811804.1	LINC00877-244	487	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000811823.1	LINC00877-263	485	No protein	-	lncRNA	-	-
ENST00000811838.1	LINC00877-278	482	No protein	-	lncRNA	-	-
ENST00000811842.1	LINC00877-282	473	No protein	-	lncRNA	-	-
ENST00000811836.1	LINC00877-276	452	No protein	-	lncRNA	-	-
ENST00000811796.1	LINC00877-236	449	No protein	-	lncRNA	-	-
ENST00000811837.1	LINC00877-277	441	No protein	-	lncRNA	-	-
ENST00000811810.1	LINC00877-250	437	No protein	-	lncRNA	-	-
ENST00000811820.1	LINC00877-260	431	No protein	-	lncRNA	-	-
ENST00000811841.1	LINC00877-281	412	No protein	-	lncRNA	-	-
ENST00000811822.1	LINC00877-262	409	No protein	-	lncRNA	-	-
ENST00000811824.1	LINC00877-264	404	No protein	-	lncRNA	-	-
ENST00000811815.1	LINC00877-255	398	No protein	-	lncRNA	-	-
ENST00000811847.1	LINC00877-287	376	No protein	-	lncRNA	-	-
ENST00000811797.1	LINC00877-237	373	No protein	-	lncRNA	-	-
ENST00000811825.1	LINC00877-265	338	No protein	-	lncRNA	-	-
ENST00000811839.1	LINC00877-279	314	No protein	-	lncRNA	-	-
ENST00000618391.1	LINC00877-210	306	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000811816.1	LINC00877-256	297	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 515 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000462492.8

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000462492.8 LINC00877-201

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Transcript: ENST00000462492.8 LINC00877-201

Summary

About Us

Get help

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