Transcript: ENST00000457566.1 RFX3-DT-204

Description

RFX3 divergent transcript [Source:HGNC Symbol;Acc:HGNC:51197]

Gene Synonyms

RFX3-AS1

Location

Chromosome 9: 3,668,086-3,671,646 forward strand.

About this transcript

This transcript has 2 exons and maps to 117 oligo probes.

Gene

This transcript is a product of gene ENSG00000232104.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000836006.1	RFX3-DT-213	1301	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000427722.3	RFX3-DT-202	4888	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000836010.1	RFX3-DT-217	2418	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000836007.1	RFX3-DT-214	2119	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000836014.1	RFX3-DT-221	2004	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000836053.1	RFX3-DT-260	1545	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701788.2	RFX3-DT-211	1532	No protein	-	lncRNA	-	-
ENST00000701201.1	RFX3-DT-210	1473	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000836020.1	RFX3-DT-227	1278	No protein	-	lncRNA	-	-
ENST00000836027.1	RFX3-DT-234	1195	No protein	-	lncRNA	-	-
ENST00000836018.1	RFX3-DT-225	1188	No protein	-	lncRNA	-	-
ENST00000836011.1	RFX3-DT-218	1187	No protein	-	lncRNA	-	-
ENST00000691026.2	RFX3-DT-206	1145	No protein	-	lncRNA	-	-
ENST00000836009.1	RFX3-DT-216	1127	No protein	-	lncRNA	-	-
ENST00000836044.1	RFX3-DT-251	1117	No protein	-	lncRNA	-	-
ENST00000836019.1	RFX3-DT-226	1088	No protein	-	lncRNA	-	-
ENST00000836008.1	RFX3-DT-215	1054	No protein	-	lncRNA	-	-
ENST00000701837.2	RFX3-DT-212	1052	No protein	-	lncRNA	-	-
ENST00000836046.1	RFX3-DT-253	983	No protein	-	lncRNA	-	-
ENST00000691391.1	RFX3-DT-207	976	No protein	-	lncRNA	-	-
ENST00000836052.1	RFX3-DT-259	968	No protein	-	lncRNA	-	-
ENST00000659166.1	RFX3-DT-205	941	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000836031.1	RFX3-DT-238	885	No protein	-	lncRNA	-	-
ENST00000836045.1	RFX3-DT-252	878	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000836041.1	RFX3-DT-248	865	No protein	-	lncRNA	-	-
ENST00000836029.1	RFX3-DT-236	864	No protein	-	lncRNA	-	-
ENST00000836030.1	RFX3-DT-237	843	No protein	-	lncRNA	-	-
ENST00000836038.1	RFX3-DT-245	828	No protein	-	lncRNA	-	-
ENST00000836028.1	RFX3-DT-235	807	No protein	-	lncRNA	-	-
ENST00000836051.1	RFX3-DT-258	798	No protein	-	lncRNA	-	-
ENST00000836034.1	RFX3-DT-241	789	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000836040.1	RFX3-DT-247	777	No protein	-	lncRNA	-	-
ENST00000836033.1	RFX3-DT-240	775	No protein	-	lncRNA	-	-
ENST00000700933.1	RFX3-DT-209	765	No protein	-	lncRNA	-	-
ENST00000430387.1	RFX3-DT-203	728	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000836037.1	RFX3-DT-244	710	No protein	-	lncRNA	-	-
ENST00000836016.1	RFX3-DT-223	698	No protein	-	lncRNA	-	-
ENST00000836013.1	RFX3-DT-220	694	No protein	-	lncRNA	-	-
ENST00000836012.1	RFX3-DT-219	693	No protein	-	lncRNA	-	-
ENST00000836021.1	RFX3-DT-228	680	No protein	-	lncRNA	-	-
ENST00000836032.1	RFX3-DT-239	679	No protein	-	lncRNA	-	-
ENST00000836043.1	RFX3-DT-250	677	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000836036.1	RFX3-DT-243	675	No protein	-	lncRNA	-	-
ENST00000836035.1	RFX3-DT-242	668	No protein	-	lncRNA	-	-
ENST00000836025.1	RFX3-DT-232	659	No protein	-	lncRNA	-	-
ENST00000836024.1	RFX3-DT-231	611	No protein	-	lncRNA	-	-
ENST00000836023.1	RFX3-DT-230	566	No protein	-	lncRNA	-	-
ENST00000423112.2	RFX3-DT-201	552	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000836026.1	RFX3-DT-233	548	No protein	-	lncRNA	-	-
ENST00000836022.1	RFX3-DT-229	507	No protein	-	lncRNA	-	-
ENST00000836050.1	RFX3-DT-257	505	No protein	-	lncRNA	-	-
ENST00000457566.1	RFX3-DT-204	496	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000836017.1	RFX3-DT-224	464	No protein	-	lncRNA	-	-
ENST00000836049.1	RFX3-DT-256	463	No protein	-	lncRNA	-	-
ENST00000836015.1	RFX3-DT-222	421	No protein	-	lncRNA	-	-
ENST00000836042.1	RFX3-DT-249	416	No protein	-	lncRNA	-	-
ENST00000836039.1	RFX3-DT-246	357	No protein	-	lncRNA	-	-
ENST00000836048.1	RFX3-DT-255	332	No protein	-	lncRNA	-	-
ENST00000836047.1	RFX3-DT-254	297	No protein	-	lncRNA	-	-
ENST00000692967.1	RFX3-DT-208	285	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 496 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000457566.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000457566.1 RFX3-DT-204

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Transcript: ENST00000457566.1 RFX3-DT-204

Summary

About Us

Get help

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