Transcript: ENST00000452675.3 LINC02541-202

Description

long intergenic non-protein coding RNA 2541 [Source:HGNC Symbol;Acc:HGNC:53574]

Gene Synonyms

RP11-367G18.1

Location

Chromosome 6: 113,627,428-113,632,672 reverse strand.

About this transcript

This transcript has 2 exons and maps to 196 oligo probes.

Gene

This transcript is a product of gene ENSG00000230943.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000788883.1	LINC02541-207	1417	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000649523.1	LINC02541-203	1879	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654213.2	LINC02541-204	1707	No protein	-	lncRNA	-	-
ENST00000788898.1	LINC02541-222	1665	No protein	-	lncRNA	-	-
ENST00000788912.1	LINC02541-236	1646	No protein	-	lncRNA	-	-
ENST00000788899.1	LINC02541-223	1627	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000788902.1	LINC02541-226	1610	No protein	-	lncRNA	-	-
ENST00000788910.1	LINC02541-234	1600	No protein	-	lncRNA	-	-
ENST00000788913.1	LINC02541-237	1590	No protein	-	lncRNA	-	-
ENST00000788901.1	LINC02541-225	1534	No protein	-	lncRNA	-	-
ENST00000788885.1	LINC02541-209	1504	No protein	-	lncRNA	-	-
ENST00000788915.1	LINC02541-239	1497	No protein	-	lncRNA	-	-
ENST00000788900.1	LINC02541-224	1483	No protein	-	lncRNA	-	-
ENST00000788911.1	LINC02541-235	1480	No protein	-	lncRNA	-	-
ENST00000788903.1	LINC02541-227	1474	No protein	-	lncRNA	-	-
ENST00000788889.1	LINC02541-213	1451	No protein	-	lncRNA	-	-
ENST00000788887.1	LINC02541-211	1438	No protein	-	lncRNA	-	-
ENST00000788884.1	LINC02541-208	1429	No protein	-	lncRNA	-	-
ENST00000788897.1	LINC02541-221	1286	No protein	-	lncRNA	-	-
ENST00000788888.1	LINC02541-212	1264	No protein	-	lncRNA	-	-
ENST00000788886.1	LINC02541-210	1208	No protein	-	lncRNA	-	-
ENST00000788908.1	LINC02541-232	1160	No protein	-	lncRNA	-	-
ENST00000788907.1	LINC02541-231	989	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000788892.1	LINC02541-216	882	No protein	-	lncRNA	-	-
ENST00000657627.1	LINC02541-205	802	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701104.2	LINC02541-206	780	No protein	-	lncRNA	-	-
ENST00000788893.1	LINC02541-217	774	No protein	-	lncRNA	-	-
ENST00000452675.3	LINC02541-202	621	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000788904.1	LINC02541-228	573	No protein	-	lncRNA	-	-
ENST00000788916.1	LINC02541-240	562	No protein	-	lncRNA	-	-
ENST00000788909.1	LINC02541-233	515	No protein	-	lncRNA	-	-
ENST00000788891.1	LINC02541-215	500	No protein	-	lncRNA	-	-
ENST00000788914.1	LINC02541-238	493	No protein	-	lncRNA	-	-
ENST00000788895.1	LINC02541-219	472	No protein	-	lncRNA	-	-
ENST00000788894.1	LINC02541-218	470	No protein	-	lncRNA	-	-
ENST00000788890.1	LINC02541-214	469	No protein	-	lncRNA	-	-
ENST00000788906.1	LINC02541-230	439	No protein	-	lncRNA	-	-
ENST00000788896.1	LINC02541-220	416	No protein	-	lncRNA	-	-
ENST00000788905.1	LINC02541-229	413	No protein	-	lncRNA	-	-
ENST00000427157.1	LINC02541-201	327	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 621 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000452675.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000452675.3 LINC02541-202

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Transcript: ENST00000452675.3 LINC02541-202

Summary

About Us

Get help

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