Transcript: ENST00000450848.6 LINC01821-203

Description

long intergenic non-protein coding RNA 1821 [Source:HGNC Symbol;Acc:HGNC:52626]

Location

Chromosome 2: 194,344,269-194,391,975 forward strand.

About this transcript

This transcript has 5 exons and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSG00000225539.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000659759.1	LINC01821-211	1974	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000653550.2	LINC01821-206	1931	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000450848.6	LINC01821-203	1673	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000778660.1	LINC01821-239	1397	No protein	-	lncRNA	-	-
ENST00000659259.1	LINC01821-210	1351	No protein	-	lncRNA	-	-
ENST00000778672.1	LINC01821-251	1347	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654688.1	LINC01821-207	1333	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000419786.2	LINC01821-201	1319	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000692688.1	LINC01821-216	1288	No protein	-	lncRNA	-	-
ENST00000778666.1	LINC01821-245	1276	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778642.1	LINC01821-221	1239	No protein	-	lncRNA	-	-
ENST00000650872.1	LINC01821-204	1199	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778639.1	LINC01821-218	1173	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778668.1	LINC01821-247	1114	No protein	-	lncRNA	-	-
ENST00000778670.1	LINC01821-249	1086	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778641.1	LINC01821-220	1052	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655549.1	LINC01821-208	1048	No protein	-	lncRNA	-	-
ENST00000701609.1	LINC01821-217	1032	No protein	-	lncRNA	-	-
ENST00000778671.1	LINC01821-250	1010	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778652.1	LINC01821-231	1009	No protein	-	lncRNA	-	-
ENST00000778649.1	LINC01821-228	1003	No protein	-	lncRNA	-	-
ENST00000656546.3	LINC01821-209	990	No protein	-	lncRNA	-	-
ENST00000778648.1	LINC01821-227	989	No protein	-	lncRNA	-	-
ENST00000778673.1	LINC01821-252	970	No protein	-	lncRNA	-	-
ENST00000668090.1	LINC01821-214	969	No protein	-	lncRNA	-	-
ENST00000778680.1	LINC01821-259	964	No protein	-	lncRNA	-	-
ENST00000778674.1	LINC01821-253	954	No protein	-	lncRNA	-	-
ENST00000778669.1	LINC01821-248	947	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661930.2	LINC01821-213	939	No protein	-	lncRNA	-	-
ENST00000778640.1	LINC01821-219	933	No protein	-	lncRNA	-	-
ENST00000778682.1	LINC01821-261	924	No protein	-	lncRNA	-	-
ENST00000778677.1	LINC01821-256	907	No protein	-	lncRNA	-	-
ENST00000778644.1	LINC01821-223	906	No protein	-	lncRNA	-	-
ENST00000778659.1	LINC01821-238	898	No protein	-	lncRNA	-	-
ENST00000778662.1	LINC01821-241	897	No protein	-	lncRNA	-	-
ENST00000438505.5	LINC01821-202	882	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000778645.1	LINC01821-224	867	No protein	-	lncRNA	-	-
ENST00000778646.1	LINC01821-225	866	No protein	-	lncRNA	-	-
ENST00000778650.1	LINC01821-229	864	No protein	-	lncRNA	-	-
ENST00000778663.1	LINC01821-242	833	No protein	-	lncRNA	-	-
ENST00000653542.1	LINC01821-205	821	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778647.1	LINC01821-226	817	No protein	-	lncRNA	-	-
ENST00000660800.4	LINC01821-212	816	No protein	-	lncRNA	-	-
ENST00000689500.1	LINC01821-215	815	No protein	-	lncRNA	-	-
ENST00000778657.1	LINC01821-236	809	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778653.1	LINC01821-232	766	No protein	-	lncRNA	-	-
ENST00000778679.1	LINC01821-258	759	No protein	-	lncRNA	-	-
ENST00000778667.1	LINC01821-246	750	No protein	-	lncRNA	-	-
ENST00000778643.1	LINC01821-222	703	No protein	-	lncRNA	-	-
ENST00000778676.1	LINC01821-255	694	No protein	-	lncRNA	-	-
ENST00000778656.1	LINC01821-235	678	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778661.1	LINC01821-240	673	No protein	-	lncRNA	-	-
ENST00000778665.1	LINC01821-244	670	No protein	-	lncRNA	-	-
ENST00000778681.1	LINC01821-260	670	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778675.1	LINC01821-254	666	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778654.1	LINC01821-233	656	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000778651.1	LINC01821-230	641	No protein	-	lncRNA	-	-
ENST00000778664.1	LINC01821-243	616	No protein	-	lncRNA	-	-
ENST00000778686.1	LINC01821-265	605	No protein	-	lncRNA	-	-
ENST00000778658.1	LINC01821-237	583	No protein	-	lncRNA	-	-
ENST00000778683.1	LINC01821-262	549	No protein	-	lncRNA	-	-
ENST00000778678.1	LINC01821-257	536	No protein	-	lncRNA	-	-
ENST00000778655.1	LINC01821-234	488	No protein	-	lncRNA	-	-
ENST00000778685.1	LINC01821-264	488	No protein	-	lncRNA	-	-
ENST00000778684.1	LINC01821-263	410	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,673 bps,

Transcript Support Level (TSL)

TSL:4

Version

ENST00000450848.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000450848.6 LINC01821-203

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Transcript: ENST00000450848.6 LINC01821-203

Summary

About Us

Get help

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