Transcript: ENST00000449560.5 HLA-DQA2-208

Description

major histocompatibility complex, class II, DQ alpha 2 [Source:HGNC Symbol;Acc:HGNC:4943]

Gene Synonyms

HLA-DXA

Location

Scaffold HSCHR6_MHC_APD_CTG1: 4,047,520-4,053,351 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 3083 variant alleles and maps to 1269 oligo probes.

Gene

This transcript is a product of gene ENSG00000233192.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000449560.5	HLA-DQA2-208	1648	255aa	ENSP00000401098.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P01906 Q76NI6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000546801.2	HLA-DQA2-209	1152	255aa	ENSP00000447668.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P01906 Q76NI6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,648 bps, Translation length: 255 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01906

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000449560.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000449560.5 HLA-DQA2-208

Summary

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Transcript: ENST00000449560.5 HLA-DQA2-208

Summary

About Us

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