Transcript: ENST00000442956.1 LINC00299-202

Description

long intergenic non-protein coding RNA 299 [Source:HGNC Symbol;Acc:HGNC:27940]

Gene Synonyms

C2ORF46, FLJ45673, NCRNA00299

Location

Chromosome 2: 8,207,143-8,328,419 reverse strand.

About this transcript

This transcript has 10 exons, is associated with 51317 variant alleles and maps to 419 oligo probes.

Gene

This transcript is a product of gene ENSG00000236790.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000430192.5	LINC00299-201	1760	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000668575.1	LINC00299-219	3830	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000662336.1	LINC00299-212	3752	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000654099.1	LINC00299-205	2772	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000657310.1	LINC00299-209	2376	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442956.1	LINC00299-202	2342	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000664728.1	LINC00299-214	2138	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000665772.1	LINC00299-215	1932	No protein	-	lncRNA	-	-
ENST00000666457.1	LINC00299-216	1527	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000655006.1	LINC00299-206	1489	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000658862.1	LINC00299-210	1445	No protein	-	lncRNA	-	-
ENST00000667380.1	LINC00299-217	1378	No protein	-	lncRNA	-	-
ENST00000669954.1	LINC00299-220	1333	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000655671.1	LINC00299-207	1138	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000657091.1	LINC00299-208	1104	No protein	-	lncRNA	-	-
ENST00000661371.1	LINC00299-211	1045	No protein	-	lncRNA	-	-
ENST00000689905.1	LINC00299-222	1012	No protein	-	lncRNA	-	-
ENST00000668369.1	LINC00299-218	715	No protein	-	lncRNA	-	-
ENST00000692033.1	LINC00299-223	653	No protein	-	lncRNA	-	-
ENST00000454043.1	LINC00299-204	591	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000664004.1	LINC00299-213	589	No protein	-	lncRNA	-	-
ENST00000444688.1	LINC00299-203	537	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000686209.1	LINC00299-221	422	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 2,342 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000442956.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000442956.1 LINC00299-202

Summary

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Transcript: ENST00000442956.1 LINC00299-202

Summary

About Us

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