Transcript: ENST00000442621.2 OVAAL-201

Description

ovarian adenocarcinoma amplified long non-coding RNA [Source:HGNC Symbol;Acc:HGNC:49422]

Gene Synonyms

LINC01131, OVAL, RMEL2

Location

Chromosome 1: 180,558,964-180,566,518 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2983 variant alleles and maps to 178 oligo probes.

Gene

This transcript is a product of gene ENSG00000236719.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000442621.2	OVAAL-201	1501	No protein	-	lncRNA	NR_125716.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000673955.1	OVAAL-206	1786	No protein	-	lncRNA	-	-
ENST00000818816.1	OVAAL-211	1714	No protein	-	lncRNA	-	-
ENST00000668742.2	OVAAL-205	1591	No protein	-	lncRNA	-	-
ENST00000648175.1	OVAAL-202	1524	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000718013.1	OVAAL-207	1512	No protein	-	lncRNA	-	-
ENST00000818817.1	OVAAL-212	1507	No protein	-	lncRNA	-	-
ENST00000818818.1	OVAAL-213	1473	No protein	-	lncRNA	-	-
ENST00000662859.1	OVAAL-204	1462	No protein	-	lncRNA	-	-
ENST00000660699.1	OVAAL-203	1431	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000718014.1	OVAAL-208	1384	No protein	-	lncRNA	-	-
ENST00000718015.1	OVAAL-209	1353	No protein	-	lncRNA	-	-
ENST00000744191.1	OVAAL-210	579	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,501 bps,

MANE

This MANE Select transcript has no translation and matches to NR_125716.2

Transcript Support Level (TSL)

TSL:1

Version

ENST00000442621.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000442621.2 OVAAL-201

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Transcript: ENST00000442621.2 OVAAL-201

Summary

About Us

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