Transcript: ENST00000441907.2 LINC02645-203

Description

long intergenic non-protein coding RNA 2645 [Source:HGNC Symbol;Acc:HGNC:54129]

Location

Chromosome 10: 2,446,256-2,501,918 reverse strand.

About this transcript

This transcript has 5 exons and maps to 174 oligo probes.

Gene

This transcript is a product of gene ENSG00000234170.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000666064.1	LINC02645-212	441	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000655634.1	LINC02645-204	1762	No protein	-	lncRNA	-	-
ENST00000664791.1	LINC02645-210	1543	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667195.2	LINC02645-213	1412	No protein	-	lncRNA	-	-
ENST00000668732.1	LINC02645-214	1403	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662131.2	LINC02645-207	1357	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773598.1	LINC02645-215	1324	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773601.1	LINC02645-218	1288	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661232.1	LINC02645-206	1207	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664302.1	LINC02645-209	1204	No protein	-	lncRNA	-	-
ENST00000658961.2	LINC02645-205	1091	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773624.1	LINC02645-241	1036	No protein	-	lncRNA	-	-
ENST00000773600.1	LINC02645-217	996	No protein	-	lncRNA	-	-
ENST00000665692.1	LINC02645-211	985	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773623.1	LINC02645-240	953	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000441907.2	LINC02645-203	931	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000773603.1	LINC02645-220	926	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000414107.6	LINC02645-201	912	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000773602.1	LINC02645-219	904	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773599.1	LINC02645-216	883	No protein	-	lncRNA	-	-
ENST00000773609.1	LINC02645-226	850	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773604.1	LINC02645-221	845	No protein	-	lncRNA	-	-
ENST00000663504.1	LINC02645-208	811	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773619.1	LINC02645-236	717	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773605.1	LINC02645-222	716	No protein	-	lncRNA	-	-
ENST00000439973.2	LINC02645-202	712	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000773617.1	LINC02645-234	708	No protein	-	lncRNA	-	-
ENST00000773613.1	LINC02645-230	692	No protein	-	lncRNA	-	-
ENST00000773608.1	LINC02645-225	655	No protein	-	lncRNA	-	-
ENST00000773607.1	LINC02645-224	627	No protein	-	lncRNA	-	-
ENST00000773612.1	LINC02645-229	599	No protein	-	lncRNA	-	-
ENST00000773620.1	LINC02645-237	588	No protein	-	lncRNA	-	-
ENST00000773614.1	LINC02645-231	540	No protein	-	lncRNA	-	-
ENST00000773618.1	LINC02645-235	520	No protein	-	lncRNA	-	-
ENST00000773622.1	LINC02645-239	515	No protein	-	lncRNA	-	-
ENST00000773621.1	LINC02645-238	513	No protein	-	lncRNA	-	-
ENST00000773615.1	LINC02645-232	476	No protein	-	lncRNA	-	-
ENST00000773610.1	LINC02645-227	447	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773611.1	LINC02645-228	445	No protein	-	lncRNA	-	-
ENST00000773606.1	LINC02645-223	418	No protein	-	lncRNA	-	-
ENST00000773616.1	LINC02645-233	347	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 931 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000441907.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000441907.2 LINC02645-203

Summary

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Transcript: ENST00000441907.2 LINC02645-203

Summary

About Us

Get help

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