Transcript: ENST00000441851.1

Description

novel transcript

Location

Chromosome 1: 168,400,829-168,422,656 reverse strand.

About this transcript

This transcript has 4 exons and maps to 354 oligo probes.

Gene

This transcript is a product of gene ENSG00000228697.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000823095.1	-	652	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000702086.2	-	1825	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000441851.1	-	1801	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000687227.3	-	1738	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000636459.1	-	1665	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000823097.1	-	1557	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000650143.1	-	1499	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655897.4	-	1319	No protein	-	lncRNA	-	-
ENST00000823124.1	-	1266	No protein	-	lncRNA	-	-
ENST00000823096.1	-	1221	No protein	-	lncRNA	-	-
ENST00000823111.1	-	1214	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000823113.1	-	1213	No protein	-	lncRNA	-	-
ENST00000823123.1	-	1177	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655809.1	-	1142	No protein	-	lncRNA	-	-
ENST00000850661.1	-	1110	No protein	-	lncRNA	-	-
ENST00000660568.2	-	1088	No protein	-	lncRNA	-	-
ENST00000701228.1	-	985	No protein	-	lncRNA	-	-
ENST00000823112.1	-	974	No protein	-	lncRNA	-	-
ENST00000823101.1	-	874	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000686713.2	-	789	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000823114.1	-	777	No protein	-	lncRNA	-	-
ENST00000717031.1	-	750	No protein	-	lncRNA	-	-
ENST00000702777.2	-	743	No protein	-	lncRNA	-	-
ENST00000686791.2	-	740	No protein	-	lncRNA	-	-
ENST00000823106.1	-	716	No protein	-	lncRNA	-	-
ENST00000693652.3	-	709	No protein	-	lncRNA	-	-
ENST00000702283.2	-	705	No protein	-	lncRNA	-	-
ENST00000684886.3	-	702	No protein	-	lncRNA	-	-
ENST00000823115.1	-	671	No protein	-	lncRNA	-	-
ENST00000701058.1	-	655	No protein	-	lncRNA	-	-
ENST00000823117.1	-	643	No protein	-	lncRNA	-	-
ENST00000823102.1	-	642	No protein	-	lncRNA	-	-
ENST00000823110.1	-	627	No protein	-	lncRNA	-	-
ENST00000702441.2	-	611	No protein	-	lncRNA	-	-
ENST00000823109.1	-	611	No protein	-	lncRNA	-	-
ENST00000701207.2	-	606	No protein	-	lncRNA	-	-
ENST00000702820.2	-	594	No protein	-	lncRNA	-	-
ENST00000823104.1	-	579	No protein	-	lncRNA	-	-
ENST00000823116.1	-	559	No protein	-	lncRNA	-	-
ENST00000823118.1	-	553	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000823119.1	-	544	No protein	-	lncRNA	-	-
ENST00000823099.1	-	541	No protein	-	lncRNA	-	-
ENST00000823105.1	-	536	No protein	-	lncRNA	-	-
ENST00000422253.1	-	519	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000823120.1	-	512	No protein	-	lncRNA	-	-
ENST00000823122.1	-	492	No protein	-	lncRNA	-	-
ENST00000701536.2	-	463	No protein	-	lncRNA	-	-
ENST00000823108.1	-	462	No protein	-	lncRNA	-	-
ENST00000823098.1	-	452	No protein	-	lncRNA	-	-
ENST00000823103.1	-	411	No protein	-	lncRNA	-	-
ENST00000823121.1	-	405	No protein	-	lncRNA	-	-
ENST00000422548.1	-	389	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000823100.1	-	361	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000823107.1	-	341	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,801 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000441851.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000441851.1

Summary

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Transcript: ENST00000441851.1

Summary

About Us

Get help

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