Transcript: ENST00000441544.3 LINC01664-202

Description

long intergenic non-protein coding RNA 1664 [Source:HGNC Symbol;Acc:HGNC:52452]

Location

Chromosome 22: 17,121,540-17,132,105 forward strand.

About this transcript

This transcript has 4 exons and maps to 221 oligo probes.

Gene

This transcript is a product of gene ENSG00000235478.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000846293.1	LINC01664-207	1152	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000846325.1	LINC01664-239	1558	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654656.3	LINC01664-203	1551	No protein	-	lncRNA	-	-
ENST00000846326.1	LINC01664-240	1490	No protein	-	lncRNA	-	-
ENST00000428078.5	LINC01664-201	1464	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000662102.2	LINC01664-204	1394	No protein	-	lncRNA	-	-
ENST00000846294.1	LINC01664-208	1382	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000846327.1	LINC01664-241	1306	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000441544.3	LINC01664-202	1231	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000846298.1	LINC01664-212	1193	No protein	-	lncRNA	-	-
ENST00000668330.1	LINC01664-205	1120	No protein	-	lncRNA	-	-
ENST00000846295.1	LINC01664-209	1092	No protein	-	lncRNA	-	-
ENST00000846299.1	LINC01664-213	1076	No protein	-	lncRNA	-	-
ENST00000846332.1	LINC01664-246	1056	No protein	-	lncRNA	-	-
ENST00000846328.1	LINC01664-242	994	No protein	-	lncRNA	-	-
ENST00000846296.1	LINC01664-210	972	No protein	-	lncRNA	-	-
ENST00000691167.2	LINC01664-206	960	No protein	-	lncRNA	-	-
ENST00000846330.1	LINC01664-244	944	No protein	-	lncRNA	-	-
ENST00000846329.1	LINC01664-243	922	No protein	-	lncRNA	-	-
ENST00000846302.1	LINC01664-216	914	No protein	-	lncRNA	-	-
ENST00000846301.1	LINC01664-215	909	No protein	-	lncRNA	-	-
ENST00000846309.1	LINC01664-223	892	No protein	-	lncRNA	-	-
ENST00000846320.1	LINC01664-234	892	No protein	-	lncRNA	-	-
ENST00000846304.1	LINC01664-218	889	No protein	-	lncRNA	-	-
ENST00000846310.1	LINC01664-224	887	No protein	-	lncRNA	-	-
ENST00000846321.1	LINC01664-235	877	No protein	-	lncRNA	-	-
ENST00000846318.1	LINC01664-232	875	No protein	-	lncRNA	-	-
ENST00000846300.1	LINC01664-214	860	No protein	-	lncRNA	-	-
ENST00000846307.1	LINC01664-221	860	No protein	-	lncRNA	-	-
ENST00000846313.1	LINC01664-227	851	No protein	-	lncRNA	-	-
ENST00000846297.1	LINC01664-211	840	No protein	-	lncRNA	-	-
ENST00000846324.1	LINC01664-238	822	No protein	-	lncRNA	-	-
ENST00000846317.1	LINC01664-231	821	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000846311.1	LINC01664-225	763	No protein	-	lncRNA	-	-
ENST00000846305.1	LINC01664-219	762	No protein	-	lncRNA	-	-
ENST00000846316.1	LINC01664-230	761	No protein	-	lncRNA	-	-
ENST00000846312.1	LINC01664-226	739	No protein	-	lncRNA	-	-
ENST00000846323.1	LINC01664-237	731	No protein	-	lncRNA	-	-
ENST00000846315.1	LINC01664-229	677	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000846319.1	LINC01664-233	664	No protein	-	lncRNA	-	-
ENST00000846314.1	LINC01664-228	637	No protein	-	lncRNA	-	-
ENST00000846306.1	LINC01664-220	615	No protein	-	lncRNA	-	-
ENST00000846308.1	LINC01664-222	610	No protein	-	lncRNA	-	-
ENST00000846322.1	LINC01664-236	608	No protein	-	lncRNA	-	-
ENST00000846303.1	LINC01664-217	595	No protein	-	lncRNA	-	-
ENST00000846331.1	LINC01664-245	372	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,231 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000441544.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000441544.3 LINC01664-202

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Transcript: ENST00000441544.3 LINC01664-202

Summary

About Us

Get help

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