Transcript: ENST00000441001.2 LINC02625-201

Description

long intergenic non-protein coding RNA 2625 [Source:HGNC Symbol;Acc:HGNC:54104]

Location

Chromosome 10: 61,781,745-61,821,246 reverse strand.

About this transcript

This transcript has 5 exons and maps to 146 oligo probes.

Gene

This transcript is a product of gene ENSG00000233643.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000717519.1	LINC02625-207	589	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000717544.1	LINC02625-232	1731	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717534.1	LINC02625-222	1539	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717545.1	LINC02625-233	1382	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717541.1	LINC02625-229	965	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717530.1	LINC02625-218	893	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717537.1	LINC02625-225	847	No protein	-	lncRNA	-	-
ENST00000717540.1	LINC02625-228	803	No protein	-	lncRNA	-	-
ENST00000717542.1	LINC02625-230	792	No protein	-	lncRNA	-	-
ENST00000717532.1	LINC02625-220	789	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717546.1	LINC02625-234	777	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717524.1	LINC02625-212	746	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717529.1	LINC02625-217	731	No protein	-	lncRNA	-	-
ENST00000717531.1	LINC02625-219	729	No protein	-	lncRNA	-	-
ENST00000717517.1	LINC02625-205	694	No protein	-	lncRNA	-	-
ENST00000717535.1	LINC02625-223	694	No protein	-	lncRNA	-	-
ENST00000717536.1	LINC02625-224	658	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717538.1	LINC02625-226	635	No protein	-	lncRNA	-	-
ENST00000717547.1	LINC02625-235	613	No protein	-	lncRNA	-	-
ENST00000717548.1	LINC02625-236	613	No protein	-	lncRNA	-	-
ENST00000717528.1	LINC02625-216	594	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717539.1	LINC02625-227	582	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717520.1	LINC02625-208	569	No protein	-	lncRNA	-	-
ENST00000717533.1	LINC02625-221	544	No protein	-	lncRNA	-	-
ENST00000717549.1	LINC02625-237	544	No protein	-	lncRNA	-	-
ENST00000717523.1	LINC02625-211	522	No protein	-	lncRNA	-	-
ENST00000441001.2	LINC02625-201	510	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000608672.1	LINC02625-202	497	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000717527.1	LINC02625-215	486	No protein	-	lncRNA	-	-
ENST00000717543.1	LINC02625-231	482	No protein	-	lncRNA	-	-
ENST00000717521.1	LINC02625-209	401	No protein	-	lncRNA	-	-
ENST00000717526.1	LINC02625-214	401	No protein	-	lncRNA	-	-
ENST00000717518.1	LINC02625-206	398	No protein	-	lncRNA	-	-
ENST00000717522.1	LINC02625-210	382	No protein	-	lncRNA	-	-
ENST00000717516.1	LINC02625-204	378	No protein	-	lncRNA	-	-
ENST00000717515.1	LINC02625-203	338	No protein	-	lncRNA	-	-
ENST00000717525.1	LINC02625-213	317	No protein	-	lncRNA	-	-
ENST00000830539.1	LINC02625-238	273	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 510 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000441001.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000441001.2 LINC02625-201

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Transcript: ENST00000441001.2 LINC02625-201

Summary

About Us

Get help

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