Transcript: ENST00000440902.2 LYSMD1-202

Description

LysM domain containing 1 [Source:HGNC Symbol;Acc:HGNC:32070]

Gene Synonyms

MGC35223, RP11-68I18.5, SB145

Location

Chromosome 1: 151,160,585-151,165,948 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 2373 variant alleles and maps to 145 oligo probes.

Gene

This transcript is a product of gene ENSG00000163155.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000368908.10	LYSMD1-201	2462	227aa	ENSP00000357904.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS986	Q96S90-1	NM_212551.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000440902.2	LYSMD1-202	1003	179aa	ENSP00000404059.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44218	Q96S90-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,003 bps, Translation length: 179 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96S90

CCDS

This transcript is a member of the Human CCDS set: CCDS44218

Transcript Support Level (TSL)

TSL:2

Version

ENST00000440902.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000440902.2 LYSMD1-202

Summary

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Transcript: ENST00000440902.2 LYSMD1-202

Summary

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