Transcript: ENST00000439386.4 FOXP4-AS1-203

Description

FOXP4 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:50332]

Location

Chromosome 6: 41,523,881-41,546,340 reverse strand.

About this transcript

This transcript has 2 exons and maps to 257 oligo probes.

Gene

This transcript is a product of gene ENSG00000234753.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000727791.1	FOXP4-AS1-208	870	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000727821.1	FOXP4-AS1-238	1608	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000727805.1	FOXP4-AS1-222	882	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000727823.1	FOXP4-AS1-240	850	No protein	-	lncRNA	-	-
ENST00000727824.1	FOXP4-AS1-241	800	No protein	-	lncRNA	-	-
ENST00000727796.1	FOXP4-AS1-213	798	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000727828.1	FOXP4-AS1-245	728	No protein	-	lncRNA	-	-
ENST00000727794.1	FOXP4-AS1-211	721	No protein	-	lncRNA	-	-
ENST00000432751.2	FOXP4-AS1-202	714	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000727792.1	FOXP4-AS1-209	712	No protein	-	lncRNA	-	-
ENST00000727795.1	FOXP4-AS1-212	694	No protein	-	lncRNA	-	-
ENST00000727810.1	FOXP4-AS1-227	692	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000439386.4	FOXP4-AS1-203	686	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000691406.2	FOXP4-AS1-206	675	No protein	-	lncRNA	-	-
ENST00000727793.1	FOXP4-AS1-210	659	No protein	-	lncRNA	-	-
ENST00000727829.1	FOXP4-AS1-246	657	No protein	-	lncRNA	-	-
ENST00000454812.2	FOXP4-AS1-205	647	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000727822.1	FOXP4-AS1-239	638	No protein	-	lncRNA	-	-
ENST00000727800.1	FOXP4-AS1-217	635	No protein	-	lncRNA	-	-
ENST00000727825.1	FOXP4-AS1-242	632	No protein	-	lncRNA	-	-
ENST00000414386.8	FOXP4-AS1-201	620	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000727819.1	FOXP4-AS1-236	612	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000727818.1	FOXP4-AS1-235	567	No protein	-	lncRNA	-	-
ENST00000727827.1	FOXP4-AS1-244	559	No protein	-	lncRNA	-	-
ENST00000727799.1	FOXP4-AS1-216	557	No protein	-	lncRNA	-	-
ENST00000701272.2	FOXP4-AS1-207	556	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000727808.1	FOXP4-AS1-225	549	No protein	-	lncRNA	-	-
ENST00000727826.1	FOXP4-AS1-243	540	No protein	-	lncRNA	-	-
ENST00000727798.1	FOXP4-AS1-215	535	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000727820.1	FOXP4-AS1-237	518	No protein	-	lncRNA	-	-
ENST00000727809.1	FOXP4-AS1-226	508	No protein	-	lncRNA	-	-
ENST00000727813.1	FOXP4-AS1-230	503	No protein	-	lncRNA	-	-
ENST00000727806.1	FOXP4-AS1-223	497	No protein	-	lncRNA	-	-
ENST00000727816.1	FOXP4-AS1-233	494	No protein	-	lncRNA	-	-
ENST00000727814.1	FOXP4-AS1-231	488	No protein	-	lncRNA	-	-
ENST00000727797.1	FOXP4-AS1-214	482	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000727815.1	FOXP4-AS1-232	472	No protein	-	lncRNA	-	-
ENST00000727803.1	FOXP4-AS1-220	465	No protein	-	lncRNA	-	-
ENST00000727811.1	FOXP4-AS1-228	446	No protein	-	lncRNA	-	-
ENST00000727802.1	FOXP4-AS1-219	416	No protein	-	lncRNA	-	-
ENST00000727807.1	FOXP4-AS1-224	403	No protein	-	lncRNA	-	-
ENST00000727804.1	FOXP4-AS1-221	398	No protein	-	lncRNA	-	-
ENST00000727801.1	FOXP4-AS1-218	370	No protein	-	lncRNA	-	-
ENST00000727812.1	FOXP4-AS1-229	366	No protein	-	lncRNA	-	-
ENST00000727817.1	FOXP4-AS1-234	340	No protein	-	lncRNA	-	-
ENST00000440194.1	FOXP4-AS1-204	196	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 686 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000439386.4

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000439386.4 FOXP4-AS1-203

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Transcript: ENST00000439386.4 FOXP4-AS1-203

Summary

About Us

Get help

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