major histocompatibility complex, class II, DO alpha [Source:HGNC Symbol;Acc:HGNC:4936]
HLA-D0-ALPHA, HLA-DNA, HLA-DZA
Scaffold HSCHR6_MHC_MCF_CTG1: 4,303,233-4,308,667 reverse strand.
This transcript has 5 exons, is annotated with 25 domains and features, is associated with 2285 variant alleles and maps to 1806 oligo probes.
This transcript is a product of gene ENSG00000230141.11 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000438987.2 | HLA-DOA-213 | 3489 | 250aa | ENSP00000395737.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A1V0E3M7 A0A1V0E3N1 A0A1V0E3N3 A0A1V0E3N6 A0A1V0E3N7 A0A1V0E3P0 A0A1V0E3P1 A0A1V0E3P3 A0A1V0E3P6 A0A1V0E3P8 A0A1V0E3P9 A0A1V0E3Q1 A0A1V0E3Q2 A0A1V0E3Q3 A0A1V0E3Q4 A0A1V0E3Q5 A0A1V0E3Q6 A0A1V0E3Q7 A0A1V0E3Q8 A0A1V0E3R0 A0A1V0E3R3 A0A1V0E3R4 A0A1V0E3R6 A0A1V0E3R8 A0A1V0E3S0 A0A1V0E3S4 A0A1V0E3S6 A0A1V0E3S7 A0A1V0E3T1 P06340 X5CF87 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, | |
| ENST00000444109.1 | HLA-DOA-214 | 303 | 86aa | ENSP00000402347.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A140T9G1 | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000489297.1 | HLA-DOA-216 | 545 | No protein | - | Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined | - | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, | |
| ENST00000494729.1 | HLA-DOA-218 | 472 | No protein | - | Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined | - | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, | |
| ENST00000492839.5 | HLA-DOA-217 | 402 | No protein | - | Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined | - | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, | |
| ENST00000485411.1 | HLA-DOA-215 | 596 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, |