Transcript: ENST00000435493.3 LINC00323-201

Description

long intergenic non-protein coding RNA 323 [Source:HGNC Symbol;Acc:HGNC:19720]

Gene Synonyms

C21ORF130, FLJ37173, NCRNA00323, PRED42

Location

Chromosome 21: 41,141,536-41,168,796 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 11874 variant alleles and maps to 256 oligo probes.

Gene

This transcript is a product of gene ENSG00000226496.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000435493.3	LINC00323-201	2450	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000660097.2	LINC00323-205	2234	No protein	-	lncRNA	-	-
ENST00000654244.2	LINC00323-204	2165	No protein	-	lncRNA	-	-
ENST00000441268.2	LINC00323-202	2095	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000836835.1	LINC00323-206	802	No protein	-	lncRNA	-	-
ENST00000446910.2	LINC00323-203	788	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000836838.1	LINC00323-209	667	No protein	-	lncRNA	-	-
ENST00000836839.1	LINC00323-210	643	No protein	-	lncRNA	-	-
ENST00000836837.1	LINC00323-208	629	No protein	-	lncRNA	-	-
ENST00000836836.1	LINC00323-207	606	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,450 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000435493.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000435493.3 LINC00323-201

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Transcript: ENST00000435493.3 LINC00323-201

Summary

About Us

Get help

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