Transcript: ENST00000430244.2 STAG3L4-203

Description

STAG3 cohesin complex component like 4 (pseudogene) [Source:NCBI gene (formerly Entrezgene);Acc:64940]

Gene Synonyms

STAG3L4P

Location

Chromosome 7: 67,335,879-67,340,034 forward strand.

About this transcript

This transcript has 3 exons and maps to 171 oligo probes.

Gene

This transcript is a product of gene ENSG00000291153.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000472361.6	STAG3L4-204	1726	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000647855.1	STAG3L4-205	1413	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000416602.6	STAG3L4-202	2143	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000689978.1	STAG3L4-209	1968	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829145.1	STAG3L4-212	1790	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829154.1	STAG3L4-221	1738	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000691248.3	STAG3L4-210	1707	No protein	-	lncRNA	-	-
ENST00000829144.1	STAG3L4-211	1616	No protein	-	lncRNA	-	-
ENST00000689067.2	STAG3L4-207	1565	No protein	-	lncRNA	-	-
ENST00000829146.1	STAG3L4-213	1548	No protein	-	lncRNA	-	-
ENST00000829148.1	STAG3L4-215	1412	No protein	-	lncRNA	-	-
ENST00000829170.1	STAG3L4-237	1345	No protein	-	lncRNA	-	-
ENST00000829153.1	STAG3L4-220	1295	No protein	-	lncRNA	-	-
ENST00000829147.1	STAG3L4-214	1194	No protein	-	lncRNA	-	-
ENST00000829151.1	STAG3L4-218	1189	No protein	-	lncRNA	-	-
ENST00000829169.1	STAG3L4-236	1111	No protein	-	lncRNA	-	-
ENST00000829150.1	STAG3L4-217	1093	No protein	-	lncRNA	-	-
ENST00000829149.1	STAG3L4-216	1015	No protein	-	lncRNA	-	-
ENST00000829158.1	STAG3L4-225	1002	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829173.1	STAG3L4-240	933	No protein	-	lncRNA	-	-
ENST00000687534.3	STAG3L4-206	896	No protein	-	lncRNA	-	-
ENST00000829168.1	STAG3L4-235	872	No protein	-	lncRNA	-	-
ENST00000829152.1	STAG3L4-219	858	No protein	-	lncRNA	-	-
ENST00000829171.1	STAG3L4-238	766	No protein	-	lncRNA	-	-
ENST00000829156.1	STAG3L4-223	763	No protein	-	lncRNA	-	-
ENST00000829160.1	STAG3L4-227	755	No protein	-	lncRNA	-	-
ENST00000829176.1	STAG3L4-243	723	No protein	-	lncRNA	-	-
ENST00000829164.1	STAG3L4-231	705	No protein	-	lncRNA	-	-
ENST00000829167.1	STAG3L4-234	704	No protein	-	lncRNA	-	-
ENST00000689458.3	STAG3L4-208	691	No protein	-	lncRNA	-	-
ENST00000829163.1	STAG3L4-230	676	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829159.1	STAG3L4-226	651	No protein	-	lncRNA	-	-
ENST00000829155.1	STAG3L4-222	644	No protein	-	lncRNA	-	-
ENST00000829161.1	STAG3L4-228	608	No protein	-	lncRNA	-	-
ENST00000430244.2	STAG3L4-203	596	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000829162.1	STAG3L4-229	578	No protein	-	lncRNA	-	-
ENST00000829178.1	STAG3L4-245	577	No protein	-	lncRNA	-	-
ENST00000829157.1	STAG3L4-224	547	No protein	-	lncRNA	-	-
ENST00000829172.1	STAG3L4-239	540	No protein	-	lncRNA	-	-
ENST00000829174.1	STAG3L4-241	517	No protein	-	lncRNA	-	-
ENST00000829177.1	STAG3L4-244	481	No protein	-	lncRNA	-	-
ENST00000829166.1	STAG3L4-233	475	No protein	-	lncRNA	-	-
ENST00000829175.1	STAG3L4-242	395	No protein	-	lncRNA	-	-
ENST00000829165.1	STAG3L4-232	290	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 596 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000430244.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

Transcript: ENST00000430244.2 STAG3L4-203

Summary

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Transcript: ENST00000430244.2 STAG3L4-203

Summary

About Us

Get help

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