Transcript: ENST00000427918.2 LINC00382-201

Description

long intergenic non-protein coding RNA 382 [Source:HGNC Symbol;Acc:HGNC:42709]

Gene Synonyms

TCONS_00021500

Location

Chromosome 13: 79,872,586-79,918,042 forward strand.

About this transcript

This transcript has 6 exons, is associated with 18517 variant alleles and maps to 268 oligo probes.

Gene

This transcript is a product of gene ENSG00000229175.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000427918.2	LINC00382-201	988	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000663622.1	LINC00382-206	1282	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657824.1	LINC00382-202	1154	No protein	-	lncRNA	-	-
ENST00000777509.1	LINC00382-209	1065	No protein	-	lncRNA	-	-
ENST00000667336.1	LINC00382-207	1010	No protein	-	lncRNA	-	-
ENST00000777510.1	LINC00382-210	1004	No protein	-	lncRNA	-	-
ENST00000660928.1	LINC00382-204	902	No protein	-	lncRNA	-	-
ENST00000667673.1	LINC00382-208	893	No protein	-	lncRNA	-	-
ENST00000658610.1	LINC00382-203	875	No protein	-	lncRNA	-	-
ENST00000661565.1	LINC00382-205	801	No protein	-	lncRNA	-	-
ENST00000777512.1	LINC00382-212	778	No protein	-	lncRNA	-	-
ENST00000777514.1	LINC00382-214	601	No protein	-	lncRNA	-	-
ENST00000777513.1	LINC00382-213	527	No protein	-	lncRNA	-	-
ENST00000777511.1	LINC00382-211	494	No protein	-	lncRNA	-	-
ENST00000777515.1	LINC00382-215	441	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 988 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000427918.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000427918.2 LINC00382-201

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Transcript: ENST00000427918.2 LINC00382-201

Summary

About Us

Get help

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