Transcript: ENST00000426539.1 GACAT3-201

Description

gastric cancer associated transcript 3 [Source:HGNC Symbol;Acc:HGNC:50847]

Gene Synonyms

LINC01458, LNCRNA-AC130710

Location

Chromosome 2: 16,050,427-16,085,801 forward strand.

About this transcript

This transcript has 4 exons, is associated with 15369 variant alleles and maps to 194 oligo probes.

Gene

This transcript is a product of gene ENSG00000236289.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000652394.1	GACAT3-206	1358	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000667080.1	GACAT3-208	2267	No protein	-	lncRNA	-	-
ENST00000651908.1	GACAT3-204	1659	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000651705.1	GACAT3-203	1457	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000652731.1	GACAT3-207	1371	No protein	-	lncRNA	-	-
ENST00000651993.1	GACAT3-205	1331	No protein	-	lncRNA	-	-
ENST00000426539.1	GACAT3-201	1096	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000442387.2	GACAT3-202	472	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,096 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000426539.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000426539.1 GACAT3-201

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Transcript: ENST00000426539.1 GACAT3-201

Summary

About Us

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