Transcript: ENST00000422960.5 HLA-F-AS1-213

Description

HLA-F antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:26645]

Location

Scaffold HSCHR6_MHC_DBB_CTG1: 989,677-1,012,119 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 12267 variant alleles and maps to 1158 oligo probes.

Gene

This transcript is a product of gene ENSG00000230017.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000422960.5	HLA-F-AS1-213	1905	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000442989.1	HLA-F-AS1-215	2830	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000434173.1	HLA-F-AS1-214	553	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,905 bps,

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000422960.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000422960.5 HLA-F-AS1-213

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000422960.5 HLA-F-AS1-213

Summary

About Us

Get help

Our sister sites

Follow us