Transcript: ENST00000422059.5 SCIRT-201

Description

stem cell inhibitory RNA transcript [Source:HGNC Symbol;Acc:HGNC:55341]

Gene Synonyms

AL109615.3, DATOC-1

Location

Chromosome 6: 43,995,723-44,074,652 reverse strand.

About this transcript

This transcript has 5 exons and maps to 236 oligo probes.

Gene

This transcript is a product of gene ENSG00000237686.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000719327.1	SCIRT-209	930	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000422059.5	SCIRT-201	2232	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000719360.1	SCIRT-242	2106	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000652850.2	SCIRT-203	2055	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719363.1	SCIRT-245	1753	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719369.1	SCIRT-251	1567	No protein	-	lncRNA	-	-
ENST00000719371.1	SCIRT-253	1456	No protein	-	lncRNA	-	-
ENST00000719366.1	SCIRT-248	1442	No protein	-	lncRNA	-	-
ENST00000719346.1	SCIRT-228	1412	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719370.1	SCIRT-252	1377	No protein	-	lncRNA	-	-
ENST00000719362.1	SCIRT-244	1355	No protein	-	lncRNA	-	-
ENST00000687275.1	SCIRT-206	1336	No protein	-	lncRNA	-	-
ENST00000719332.1	SCIRT-214	1321	No protein	-	lncRNA	-	-
ENST00000719361.1	SCIRT-243	1319	No protein	-	lncRNA	-	-
ENST00000719351.1	SCIRT-233	1261	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719331.1	SCIRT-213	1226	No protein	-	lncRNA	-	-
ENST00000719365.1	SCIRT-247	1208	No protein	-	lncRNA	-	-
ENST00000719364.1	SCIRT-246	1202	No protein	-	lncRNA	-	-
ENST00000687843.1	SCIRT-208	1197	No protein	-	lncRNA	-	-
ENST00000719341.1	SCIRT-223	1181	No protein	-	lncRNA	-	-
ENST00000719335.1	SCIRT-217	1172	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719352.1	SCIRT-234	1153	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719348.1	SCIRT-230	1134	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000687158.2	SCIRT-205	1124	No protein	-	lncRNA	-	-
ENST00000719368.1	SCIRT-250	1089	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719337.1	SCIRT-219	1084	No protein	-	lncRNA	-	-
ENST00000719343.1	SCIRT-225	1063	No protein	-	lncRNA	-	-
ENST00000719330.1	SCIRT-212	1056	No protein	-	lncRNA	-	-
ENST00000719333.1	SCIRT-215	1011	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719339.1	SCIRT-221	1007	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719353.1	SCIRT-235	1005	No protein	-	lncRNA	-	-
ENST00000719328.1	SCIRT-210	961	No protein	-	lncRNA	-	-
ENST00000719329.1	SCIRT-211	957	No protein	-	lncRNA	-	-
ENST00000719344.1	SCIRT-226	936	No protein	-	lncRNA	-	-
ENST00000719340.1	SCIRT-222	897	No protein	-	lncRNA	-	-
ENST00000719334.1	SCIRT-216	896	No protein	-	lncRNA	-	-
ENST00000719342.1	SCIRT-224	889	No protein	-	lncRNA	-	-
ENST00000719357.1	SCIRT-239	876	No protein	-	lncRNA	-	-
ENST00000687455.2	SCIRT-207	850	No protein	-	lncRNA	-	-
ENST00000719345.1	SCIRT-227	834	No protein	-	lncRNA	-	-
ENST00000719338.1	SCIRT-220	798	No protein	-	lncRNA	-	-
ENST00000719336.1	SCIRT-218	798	No protein	-	lncRNA	-	-
ENST00000719367.1	SCIRT-249	790	No protein	-	lncRNA	-	-
ENST00000719354.1	SCIRT-236	774	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655938.1	SCIRT-204	751	No protein	-	lncRNA	-	-
ENST00000719347.1	SCIRT-229	641	No protein	-	lncRNA	-	-
ENST00000719356.1	SCIRT-238	616	No protein	-	lncRNA	-	-
ENST00000719373.1	SCIRT-255	606	No protein	-	lncRNA	-	-
ENST00000607590.1	SCIRT-202	556	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000719349.1	SCIRT-231	554	No protein	-	lncRNA	-	-
ENST00000719355.1	SCIRT-237	543	No protein	-	lncRNA	-	-
ENST00000719374.1	SCIRT-256	496	No protein	-	lncRNA	-	-
ENST00000719350.1	SCIRT-232	443	No protein	-	lncRNA	-	-
ENST00000719358.1	SCIRT-240	441	No protein	-	lncRNA	-	-
ENST00000719375.1	SCIRT-257	394	No protein	-	lncRNA	-	-
ENST00000719359.1	SCIRT-241	378	No protein	-	lncRNA	-	-
ENST00000719372.1	SCIRT-254	327	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 2,232 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000422059.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000422059.5 SCIRT-201

Summary

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Transcript: ENST00000422059.5 SCIRT-201

Summary

About Us

Get help

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