Transcript: ENST00000420705.3 LINC00237-201

Description

long intergenic non-protein coding RNA 237 [Source:HGNC Symbol;Acc:HGNC:38166]

Gene Synonyms

NCRNA00237

Location

Chromosome 20: 21,092,809-21,106,358 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 6008 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSG00000225127.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000420705.3	LINC00237-201	1132	No protein	-	lncRNA	NR_190203.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000715245.2	LINC00237-219	2351	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715237.1	LINC00237-211	2143	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671648.2	LINC00237-208	1974	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000833181.1	LINC00237-233	1470	No protein	-	lncRNA	-	-
ENST00000833176.1	LINC00237-228	1459	No protein	-	lncRNA	-	-
ENST00000715239.1	LINC00237-213	1435	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670814.2	LINC00237-207	1422	No protein	-	lncRNA	-	-
ENST00000655093.3	LINC00237-204	1367	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000833175.1	LINC00237-227	1304	No protein	-	lncRNA	-	-
ENST00000455890.2	LINC00237-202	1220	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000715241.1	LINC00237-215	1209	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668281.2	LINC00237-206	1175	No protein	-	lncRNA	-	-
ENST00000715251.1	LINC00237-224	1169	No protein	-	lncRNA	-	-
ENST00000668193.1	LINC00237-205	1155	No protein	-	lncRNA	-	-
ENST00000715238.1	LINC00237-212	1130	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715243.1	LINC00237-217	982	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000685825.2	LINC00237-209	965	No protein	-	lncRNA	-	-
ENST00000833178.1	LINC00237-230	946	No protein	-	lncRNA	-	-
ENST00000833177.1	LINC00237-229	897	No protein	-	lncRNA	-	-
ENST00000691244.1	LINC00237-210	870	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715242.1	LINC00237-216	828	No protein	-	lncRNA	-	-
ENST00000833174.1	LINC00237-226	794	No protein	-	lncRNA	-	-
ENST00000833173.1	LINC00237-225	761	No protein	-	lncRNA	-	-
ENST00000833183.1	LINC00237-235	713	No protein	-	lncRNA	-	-
ENST00000833180.1	LINC00237-232	633	No protein	-	lncRNA	-	-
ENST00000593272.1	LINC00237-203	630	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000715248.1	LINC00237-221	629	No protein	-	lncRNA	-	-
ENST00000715250.1	LINC00237-223	603	No protein	-	lncRNA	-	-
ENST00000715240.1	LINC00237-214	533	No protein	-	lncRNA	-	-
ENST00000715249.1	LINC00237-222	514	No protein	-	lncRNA	-	-
ENST00000833182.1	LINC00237-234	468	No protein	-	lncRNA	-	-
ENST00000715247.1	LINC00237-220	466	No protein	-	lncRNA	-	-
ENST00000715244.2	LINC00237-218	460	No protein	-	lncRNA	-	-
ENST00000833179.1	LINC00237-231	422	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,132 bps,

MANE

This MANE Select transcript has no translation and matches to NR_190203.1

Transcript Support Level (TSL)

TSL:2

Version

ENST00000420705.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000420705.3 LINC00237-201

Summary

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Transcript: ENST00000420705.3 LINC00237-201

Summary

About Us

Get help

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