Transcript: ENST00000420701.6 LINC01378-202

Description

long intergenic non-protein coding RNA 1378 [Source:HGNC Symbol;Acc:HGNC:50645]

Location

Chromosome 4: 117,360,645-117,372,735 forward strand.

About this transcript

This transcript has 4 exons and maps to 282 oligo probes.

Gene

This transcript is a product of gene ENSG00000236922.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000717643.1	LINC01378-272	2604	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000670348.1	LINC01378-236	4486	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659910.2	LINC01378-219	3842	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667220.1	LINC01378-229	3672	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671671.1	LINC01378-239	3607	No protein	-	lncRNA	-	-
ENST00000717608.1	LINC01378-262	3080	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717641.1	LINC01378-270	3035	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668756.1	LINC01378-234	2958	No protein	-	lncRNA	-	-
ENST00000656637.1	LINC01378-217	2571	No protein	-	lncRNA	-	-
ENST00000422145.7	LINC01378-203	2516	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000717501.1	LINC01378-243	2480	No protein	-	lncRNA	-	-
ENST00000665403.1	LINC01378-225	2429	No protein	-	lncRNA	-	-
ENST00000717645.1	LINC01378-274	2335	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670630.1	LINC01378-237	2293	No protein	-	lncRNA	-	-
ENST00000717640.1	LINC01378-269	2269	No protein	-	lncRNA	-	-
ENST00000658771.2	LINC01378-218	2208	No protein	-	lncRNA	-	-
ENST00000717611.1	LINC01378-265	2122	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665215.1	LINC01378-224	2107	No protein	-	lncRNA	-	-
ENST00000655906.1	LINC01378-215	1909	No protein	-	lncRNA	-	-
ENST00000671002.1	LINC01378-238	1652	No protein	-	lncRNA	-	-
ENST00000717606.1	LINC01378-260	1633	No protein	-	lncRNA	-	-
ENST00000664454.1	LINC01378-223	1601	No protein	-	lncRNA	-	-
ENST00000662705.1	LINC01378-222	1583	No protein	-	lncRNA	-	-
ENST00000717646.1	LINC01378-275	1528	No protein	-	lncRNA	-	-
ENST00000717556.1	LINC01378-249	1524	No protein	-	lncRNA	-	-
ENST00000668162.1	LINC01378-231	1479	No protein	-	lncRNA	-	-
ENST00000717557.1	LINC01378-250	1449	No protein	-	lncRNA	-	-
ENST00000717639.1	LINC01378-268	1410	No protein	-	lncRNA	-	-
ENST00000717647.1	LINC01378-276	1374	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717637.1	LINC01378-266	1349	No protein	-	lncRNA	-	-
ENST00000669946.1	LINC01378-235	1329	No protein	-	lncRNA	-	-
ENST00000660654.1	LINC01378-220	1291	No protein	-	lncRNA	-	-
ENST00000667741.1	LINC01378-230	1287	No protein	-	lncRNA	-	-
ENST00000437514.2	LINC01378-205	1256	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000717559.1	LINC01378-252	1255	No protein	-	lncRNA	-	-
ENST00000717600.1	LINC01378-254	1185	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000828266.1	LINC01378-278	1182	No protein	-	lncRNA	-	-
ENST00000600624.6	LINC01378-207	1178	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000717603.1	LINC01378-257	1172	No protein	-	lncRNA	-	-
ENST00000717638.1	LINC01378-267	1103	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662639.2	LINC01378-221	1079	No protein	-	lncRNA	-	-
ENST00000665422.1	LINC01378-226	1029	No protein	-	lncRNA	-	-
ENST00000717610.1	LINC01378-264	1025	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717607.1	LINC01378-261	984	No protein	-	lncRNA	-	-
ENST00000654527.1	LINC01378-212	890	No protein	-	lncRNA	-	-
ENST00000717500.1	LINC01378-242	889	No protein	-	lncRNA	-	-
ENST00000717644.1	LINC01378-273	888	No protein	-	lncRNA	-	-
ENST00000668339.1	LINC01378-232	884	No protein	-	lncRNA	-	-
ENST00000656442.1	LINC01378-216	858	No protein	-	lncRNA	-	-
ENST00000717503.1	LINC01378-245	840	No protein	-	lncRNA	-	-
ENST00000828267.1	LINC01378-279	838	No protein	-	lncRNA	-	-
ENST00000654670.1	LINC01378-213	819	No protein	-	lncRNA	-	-
ENST00000717558.1	LINC01378-251	813	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000828268.1	LINC01378-280	811	No protein	-	lncRNA	-	-
ENST00000448804.7	LINC01378-206	772	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000717599.1	LINC01378-253	743	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667115.1	LINC01378-228	742	No protein	-	lncRNA	-	-
ENST00000666918.2	LINC01378-227	741	No protein	-	lncRNA	-	-
ENST00000420701.6	LINC01378-202	705	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000717601.1	LINC01378-255	701	No protein	-	lncRNA	-	-
ENST00000717604.1	LINC01378-258	684	No protein	-	lncRNA	-	-
ENST00000717642.1	LINC01378-271	651	No protein	-	lncRNA	-	-
ENST00000668361.1	LINC01378-233	641	No protein	-	lncRNA	-	-
ENST00000419264.3	LINC01378-201	635	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000717555.1	LINC01378-248	634	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717609.1	LINC01378-263	615	No protein	-	lncRNA	-	-
ENST00000655627.1	LINC01378-214	560	No protein	-	lncRNA	-	-
ENST00000426240.5	LINC01378-204	515	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000626258.2	LINC01378-210	512	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000690735.1	LINC01378-240	503	No protein	-	lncRNA	-	-
ENST00000717504.1	LINC01378-246	499	No protein	-	lncRNA	-	-
ENST00000717602.1	LINC01378-256	471	No protein	-	lncRNA	-	-
ENST00000717505.1	LINC01378-247	465	No protein	-	lncRNA	-	-
ENST00000717499.1	LINC01378-241	462	No protein	-	lncRNA	-	-
ENST00000717605.1	LINC01378-259	426	No protein	-	lncRNA	-	-
ENST00000717502.1	LINC01378-244	426	No protein	-	lncRNA	-	-
ENST00000828265.1	LINC01378-277	409	No protein	-	lncRNA	-	-
ENST00000630321.1	LINC01378-211	395	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000828269.1	LINC01378-281	385	No protein	-	lncRNA	-	-
ENST00000608048.1	LINC01378-208	165	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000615833.1	LINC01378-209	158	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 705 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000420701.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000420701.6 LINC01378-202

Summary

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Transcript: ENST00000420701.6 LINC01378-202

Summary

About Us

Get help

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