Transcript: ENST00000420285.6 LINC01739-201

Description

long intergenic non-protein coding RNA 1739 [Source:HGNC Symbol;Acc:HGNC:52527]

Location

Chromosome 1: 63,000,497-63,011,115 reverse strand.

About this transcript

This transcript has 3 exons and maps to 129 oligo probes.

Gene

This transcript is a product of gene ENSG00000229537.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000748522.1	LINC01739-206	715	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000748528.1	LINC01739-212	1183	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641712.1	LINC01739-204	1005	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000748526.1	LINC01739-210	866	No protein	-	lncRNA	-	-
ENST00000748523.1	LINC01739-207	852	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000641890.2	LINC01739-205	829	No protein	-	lncRNA	-	-
ENST00000748537.1	LINC01739-221	773	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000748530.1	LINC01739-214	691	No protein	-	lncRNA	-	-
ENST00000748539.1	LINC01739-223	673	No protein	-	lncRNA	-	-
ENST00000748531.1	LINC01739-215	672	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000425352.6	LINC01739-203	633	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000748524.1	LINC01739-208	630	No protein	-	lncRNA	-	-
ENST00000748527.1	LINC01739-211	597	No protein	-	lncRNA	-	-
ENST00000748525.1	LINC01739-209	591	No protein	-	lncRNA	-	-
ENST00000748535.1	LINC01739-219	568	No protein	-	lncRNA	-	-
ENST00000748534.1	LINC01739-218	541	No protein	-	lncRNA	-	-
ENST00000748532.1	LINC01739-216	535	No protein	-	lncRNA	-	-
ENST00000748533.1	LINC01739-217	490	No protein	-	lncRNA	-	-
ENST00000748536.1	LINC01739-220	471	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000748538.1	LINC01739-222	470	No protein	-	lncRNA	-	-
ENST00000748529.1	LINC01739-213	456	No protein	-	lncRNA	-	-
ENST00000420285.6	LINC01739-201	447	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000420659.1	LINC01739-202	445	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 447 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000420285.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

QC splicing correct [Definitions]

Transcript: ENST00000420285.6 LINC01739-201

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Transcript: ENST00000420285.6 LINC01739-201

Summary

About Us

Get help

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