Transcript: ENST00000419960.2 LINC02054-201

Description

long intergenic non-protein coding RNA 2054 [Source:HGNC Symbol;Acc:HGNC:52894]

Location

Chromosome 3: 184,401,552-184,439,650 forward strand.

About this transcript

This transcript has 3 exons and maps to 141 oligo probes.

Gene

This transcript is a product of gene ENSG00000224153.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000643190.1	LINC02054-203	1429	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000645656.1	LINC02054-204	3437	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000787886.1	LINC02054-212	1513	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000787879.1	LINC02054-205	1311	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000787884.1	LINC02054-210	1064	No protein	-	lncRNA	-	-
ENST00000787882.1	LINC02054-208	992	No protein	-	lncRNA	-	-
ENST00000419960.2	LINC02054-201	965	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000787883.1	LINC02054-209	949	No protein	-	lncRNA	-	-
ENST00000787881.1	LINC02054-207	916	No protein	-	lncRNA	-	-
ENST00000787885.1	LINC02054-211	907	No protein	-	lncRNA	-	-
ENST00000787880.1	LINC02054-206	860	No protein	-	lncRNA	-	-
ENST00000787887.1	LINC02054-213	836	No protein	-	lncRNA	-	-
ENST00000787888.1	LINC02054-214	811	No protein	-	lncRNA	-	-
ENST00000787889.1	LINC02054-215	765	No protein	-	lncRNA	-	-
ENST00000478780.1	LINC02054-202	574	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 965 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000419960.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000419960.2 LINC02054-201

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Transcript: ENST00000419960.2 LINC02054-201

Summary

About Us

Get help

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