Transcript: ENST00000418743.6 LINC01141-201

Description

long intergenic non-protein coding RNA 1141 [Source:HGNC Symbol;Acc:HGNC:49455]

Location

Chromosome 1: 20,398,085-20,429,202 reverse strand.

About this transcript

This transcript has 5 exons and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSG00000236963.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000426428.5	LINC01141-203	2993	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000816635.1	LINC01141-234	2208	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000816624.1	LINC01141-223	2176	No protein	-	lncRNA	-	-
ENST00000816638.1	LINC01141-237	2016	No protein	-	lncRNA	-	-
ENST00000691289.1	LINC01141-216	1974	No protein	-	lncRNA	-	-
ENST00000816629.1	LINC01141-228	1945	No protein	-	lncRNA	-	-
ENST00000816633.1	LINC01141-232	1939	No protein	-	lncRNA	-	-
ENST00000816636.1	LINC01141-235	1920	No protein	-	lncRNA	-	-
ENST00000816645.1	LINC01141-244	1867	No protein	-	lncRNA	-	-
ENST00000816631.1	LINC01141-230	1798	No protein	-	lncRNA	-	-
ENST00000816637.1	LINC01141-236	1789	No protein	-	lncRNA	-	-
ENST00000690859.2	LINC01141-215	1783	No protein	-	lncRNA	-	-
ENST00000816632.1	LINC01141-231	1705	No protein	-	lncRNA	-	-
ENST00000816646.1	LINC01141-245	1659	No protein	-	lncRNA	-	-
ENST00000816634.1	LINC01141-233	1653	No protein	-	lncRNA	-	-
ENST00000816650.1	LINC01141-249	1619	No protein	-	lncRNA	-	-
ENST00000816661.1	LINC01141-260	1614	No protein	-	lncRNA	-	-
ENST00000670217.3	LINC01141-211	1575	No protein	-	lncRNA	-	-
ENST00000816667.1	LINC01141-266	1549	No protein	-	lncRNA	-	-
ENST00000816663.1	LINC01141-262	1506	No protein	-	lncRNA	-	-
ENST00000816648.1	LINC01141-247	1495	No protein	-	lncRNA	-	-
ENST00000816656.1	LINC01141-255	1488	No protein	-	lncRNA	-	-
ENST00000816664.1	LINC01141-263	1488	No protein	-	lncRNA	-	-
ENST00000816643.1	LINC01141-242	1455	No protein	-	lncRNA	-	-
ENST00000816660.1	LINC01141-259	1435	No protein	-	lncRNA	-	-
ENST00000702704.1	LINC01141-222	1417	No protein	-	lncRNA	-	-
ENST00000816652.1	LINC01141-251	1416	No protein	-	lncRNA	-	-
ENST00000816644.1	LINC01141-243	1413	No protein	-	lncRNA	-	-
ENST00000816641.1	LINC01141-240	1399	No protein	-	lncRNA	-	-
ENST00000816625.1	LINC01141-224	1394	No protein	-	lncRNA	-	-
ENST00000816657.1	LINC01141-256	1392	No protein	-	lncRNA	-	-
ENST00000816642.1	LINC01141-241	1331	No protein	-	lncRNA	-	-
ENST00000816658.1	LINC01141-257	1322	No protein	-	lncRNA	-	-
ENST00000816666.1	LINC01141-265	1322	No protein	-	lncRNA	-	-
ENST00000816662.1	LINC01141-261	1284	No protein	-	lncRNA	-	-
ENST00000816668.1	LINC01141-267	1278	No protein	-	lncRNA	-	-
ENST00000686000.1	LINC01141-212	1276	No protein	-	lncRNA	-	-
ENST00000418743.6	LINC01141-201	1268	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000690112.2	LINC01141-214	1225	No protein	-	lncRNA	-	-
ENST00000816676.1	LINC01141-275	1225	No protein	-	lncRNA	-	-
ENST00000816651.1	LINC01141-250	1223	No protein	-	lncRNA	-	-
ENST00000816655.1	LINC01141-254	1211	No protein	-	lncRNA	-	-
ENST00000816653.1	LINC01141-252	1193	No protein	-	lncRNA	-	-
ENST00000693117.3	LINC01141-219	1178	No protein	-	lncRNA	-	-
ENST00000702538.1	LINC01141-221	1174	No protein	-	lncRNA	-	-
ENST00000816659.1	LINC01141-258	1169	No protein	-	lncRNA	-	-
ENST00000816627.1	LINC01141-226	1151	No protein	-	lncRNA	-	-
ENST00000816630.1	LINC01141-229	1132	No protein	-	lncRNA	-	-
ENST00000816628.1	LINC01141-227	1115	No protein	-	lncRNA	-	-
ENST00000816674.1	LINC01141-273	1099	No protein	-	lncRNA	-	-
ENST00000693701.1	LINC01141-220	1092	No protein	-	lncRNA	-	-
ENST00000816675.1	LINC01141-274	1070	No protein	-	lncRNA	-	-
ENST00000816626.1	LINC01141-225	1059	No protein	-	lncRNA	-	-
ENST00000816639.1	LINC01141-238	1052	No protein	-	lncRNA	-	-
ENST00000635577.2	LINC01141-205	1034	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000662632.1	LINC01141-209	1019	No protein	-	lncRNA	-	-
ENST00000635564.2	LINC01141-204	1018	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000816649.1	LINC01141-248	1003	No protein	-	lncRNA	-	-
ENST00000652870.1	LINC01141-206	1002	No protein	-	lncRNA	-	-
ENST00000816673.1	LINC01141-272	999	No protein	-	lncRNA	-	-
ENST00000816647.1	LINC01141-246	988	No protein	-	lncRNA	-	-
ENST00000816654.1	LINC01141-253	987	No protein	-	lncRNA	-	-
ENST00000666314.1	LINC01141-210	981	No protein	-	lncRNA	-	-
ENST00000686048.2	LINC01141-213	972	No protein	-	lncRNA	-	-
ENST00000816640.1	LINC01141-239	953	No protein	-	lncRNA	-	-
ENST00000691512.1	LINC01141-217	930	No protein	-	lncRNA	-	-
ENST00000661413.1	LINC01141-208	929	No protein	-	lncRNA	-	-
ENST00000816672.1	LINC01141-271	899	No protein	-	lncRNA	-	-
ENST00000691881.2	LINC01141-218	848	No protein	-	lncRNA	-	-
ENST00000660748.1	LINC01141-207	845	No protein	-	lncRNA	-	-
ENST00000816670.1	LINC01141-269	708	No protein	-	lncRNA	-	-
ENST00000816669.1	LINC01141-268	665	No protein	-	lncRNA	-	-
ENST00000816665.1	LINC01141-264	652	No protein	-	lncRNA	-	-
ENST00000816671.1	LINC01141-270	525	No protein	-	lncRNA	-	-
ENST00000423486.1	LINC01141-202	354	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,268 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000418743.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000418743.6 LINC01141-201

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Transcript: ENST00000418743.6 LINC01141-201

Summary

About Us

Get help

Our sister sites

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