Transcript: ENST00000417606.3 SRRM5-201

Description

serine/arginine repetitive matrix 5 [Source:HGNC Symbol;Acc:HGNC:37248]

Location

Chromosome 19: 43,612,088-43,614,498 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 24 domains and features, is associated with 1597 variant alleles and maps to 161 oligo probes.

Gene

This transcript is a product of gene ENSG00000226763.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000417606.3	SRRM5-201	2411	715aa	ENSP00000414512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46095	B3KS81	NM_001145641.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000607544.1	SRRM5-202	2698	715aa	ENSP00000476253.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46095	B3KS81	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 2,411 bps, Translation length: 715 residues

MANE

This MANE Select transcript contains ENSP00000414512 and matches to NM_001145641.2 and NP_001139113.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: B3KS81

CCDS

This transcript is a member of the Human CCDS set: CCDS46095

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000417606.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

upstream ATG [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000417606.3 SRRM5-201

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Transcript: ENST00000417606.3 SRRM5-201

Summary

About Us

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