Transcript: ENST00000416894.2 FALEC-201

Description

focally amplified lncRNA regulator of ECM1 [Source:HGNC Symbol;Acc:HGNC:43713]

Gene Synonyms

FAL1, LINC00568, NCRNA-A1

Location

Chromosome 1: 150,515,752-150,536,788 forward strand.

About this transcript

This transcript has 6 exons, is associated with 9722 variant alleles and maps to 197 oligo probes.

Gene

This transcript is a product of gene ENSG00000228126.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000416894.2	FALEC-201	2128	No protein	-	lncRNA	NR_186305.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000718312.1	FALEC-204	2271	No protein	-	lncRNA	-	-
ENST00000717990.1	FALEC-202	1800	No protein	-	lncRNA	-	-
ENST00000823966.1	FALEC-209	1450	No protein	-	lncRNA	-	-
ENST00000718313.1	FALEC-205	729	No protein	-	lncRNA	-	-
ENST00000718314.1	FALEC-206	663	No protein	-	lncRNA	-	-
ENST00000823964.1	FALEC-207	602	No protein	-	lncRNA	-	-
ENST00000823965.1	FALEC-208	564	No protein	-	lncRNA	-	-
ENST00000717991.1	FALEC-203	472	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 2,128 bps,

MANE

This MANE Select transcript has no translation and matches to NR_186305.1

Transcript Support Level (TSL)

TSL:3

Version

ENST00000416894.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

CAGE supported TSS [Definitions]

RNA-Seq supported partial

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000416894.2 FALEC-201

Summary

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Transcript: ENST00000416894.2 FALEC-201

Summary

About Us

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