Transcript: ENST00000415246.3

Description

novel transcript

Location

Chromosome 7: 17,285,371-17,298,510 reverse strand.

About this transcript

This transcript has 4 exons and maps to 153 oligo probes.

Gene

This transcript is a product of gene ENSG00000237773.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000643090.1	-	1733	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000671621.2	-	2827	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654641.1	-	2495	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665788.1	-	2367	No protein	-	lncRNA	-	-
ENST00000659951.1	-	2241	No protein	-	lncRNA	-	-
ENST00000415246.3	-	1555	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000433005.2	-	1525	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000670927.2	-	1523	No protein	-	lncRNA	-	-
ENST00000838572.1	-	1486	No protein	-	lncRNA	-	-
ENST00000838573.1	-	1324	No protein	-	lncRNA	-	-
ENST00000838520.1	-	1268	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838504.1	-	1116	No protein	-	lncRNA	-	-
ENST00000838502.1	-	1095	No protein	-	lncRNA	-	-
ENST00000838519.1	-	1049	No protein	-	lncRNA	-	-
ENST00000646331.1	-	1025	No protein	-	lncRNA	-	-
ENST00000838544.1	-	984	No protein	-	lncRNA	-	-
ENST00000838552.1	-	980	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838517.1	-	973	No protein	-	lncRNA	-	-
ENST00000838546.1	-	952	No protein	-	lncRNA	-	-
ENST00000838510.1	-	943	No protein	-	lncRNA	-	-
ENST00000838554.1	-	936	No protein	-	lncRNA	-	-
ENST00000838564.1	-	926	No protein	-	lncRNA	-	-
ENST00000838518.1	-	900	No protein	-	lncRNA	-	-
ENST00000838514.1	-	898	No protein	-	lncRNA	-	-
ENST00000659284.2	-	893	No protein	-	lncRNA	-	-
ENST00000838511.1	-	864	No protein	-	lncRNA	-	-
ENST00000838509.1	-	860	No protein	-	lncRNA	-	-
ENST00000838512.1	-	848	No protein	-	lncRNA	-	-
ENST00000838536.1	-	831	No protein	-	lncRNA	-	-
ENST00000838515.1	-	816	No protein	-	lncRNA	-	-
ENST00000838569.1	-	814	No protein	-	lncRNA	-	-
ENST00000838503.1	-	812	No protein	-	lncRNA	-	-
ENST00000838558.1	-	810	No protein	-	lncRNA	-	-
ENST00000838557.1	-	809	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838516.1	-	807	No protein	-	lncRNA	-	-
ENST00000838586.1	-	796	No protein	-	lncRNA	-	-
ENST00000838521.1	-	794	No protein	-	lncRNA	-	-
ENST00000838527.1	-	782	No protein	-	lncRNA	-	-
ENST00000419382.7	-	780	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000838567.1	-	777	No protein	-	lncRNA	-	-
ENST00000838507.1	-	775	No protein	-	lncRNA	-	-
ENST00000666752.1	-	767	No protein	-	lncRNA	-	-
ENST00000838591.1	-	767	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838513.1	-	762	No protein	-	lncRNA	-	-
ENST00000838505.1	-	752	No protein	-	lncRNA	-	-
ENST00000838540.1	-	752	No protein	-	lncRNA	-	-
ENST00000838555.1	-	751	No protein	-	lncRNA	-	-
ENST00000838587.1	-	742	No protein	-	lncRNA	-	-
ENST00000838548.1	-	740	No protein	-	lncRNA	-	-
ENST00000443664.2	-	738	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000838582.1	-	723	No protein	-	lncRNA	-	-
ENST00000452249.7	-	721	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000838501.1	-	716	No protein	-	lncRNA	-	-
ENST00000838547.1	-	711	No protein	-	lncRNA	-	-
ENST00000436175.2	-	697	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000838570.1	-	692	No protein	-	lncRNA	-	-
ENST00000838553.1	-	669	No protein	-	lncRNA	-	-
ENST00000838506.1	-	662	No protein	-	lncRNA	-	-
ENST00000838565.1	-	662	No protein	-	lncRNA	-	-
ENST00000838530.1	-	659	No protein	-	lncRNA	-	-
ENST00000838545.1	-	642	No protein	-	lncRNA	-	-
ENST00000838538.1	-	635	No protein	-	lncRNA	-	-
ENST00000838543.1	-	635	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838568.1	-	635	No protein	-	lncRNA	-	-
ENST00000838541.1	-	629	No protein	-	lncRNA	-	-
ENST00000838580.1	-	620	No protein	-	lncRNA	-	-
ENST00000838508.1	-	603	No protein	-	lncRNA	-	-
ENST00000838524.1	-	594	No protein	-	lncRNA	-	-
ENST00000838581.1	-	594	No protein	-	lncRNA	-	-
ENST00000838579.1	-	588	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838529.1	-	581	No protein	-	lncRNA	-	-
ENST00000838528.1	-	579	No protein	-	lncRNA	-	-
ENST00000838533.1	-	572	No protein	-	lncRNA	-	-
ENST00000838531.1	-	566	No protein	-	lncRNA	-	-
ENST00000838539.1	-	562	No protein	-	lncRNA	-	-
ENST00000838561.1	-	561	No protein	-	lncRNA	-	-
ENST00000838592.1	-	559	No protein	-	lncRNA	-	-
ENST00000838534.1	-	555	No protein	-	lncRNA	-	-
ENST00000838566.1	-	553	No protein	-	lncRNA	-	-
ENST00000838532.1	-	552	No protein	-	lncRNA	-	-
ENST00000448664.5	-	541	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000838577.1	-	541	No protein	-	lncRNA	-	-
ENST00000838551.1	-	536	No protein	-	lncRNA	-	-
ENST00000838584.1	-	524	No protein	-	lncRNA	-	-
ENST00000838578.1	-	521	No protein	-	lncRNA	-	-
ENST00000838526.1	-	520	No protein	-	lncRNA	-	-
ENST00000838585.1	-	517	No protein	-	lncRNA	-	-
ENST00000838525.1	-	514	No protein	-	lncRNA	-	-
ENST00000838542.1	-	510	No protein	-	lncRNA	-	-
ENST00000838576.1	-	508	No protein	-	lncRNA	-	-
ENST00000838574.1	-	498	No protein	-	lncRNA	-	-
ENST00000838560.1	-	487	No protein	-	lncRNA	-	-
ENST00000838535.1	-	484	No protein	-	lncRNA	-	-
ENST00000838559.1	-	480	No protein	-	lncRNA	-	-
ENST00000838563.1	-	473	No protein	-	lncRNA	-	-
ENST00000838588.1	-	471	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838537.1	-	467	No protein	-	lncRNA	-	-
ENST00000838562.1	-	461	No protein	-	lncRNA	-	-
ENST00000838571.1	-	461	No protein	-	lncRNA	-	-
ENST00000838522.1	-	456	No protein	-	lncRNA	-	-
ENST00000838593.1	-	453	No protein	-	lncRNA	-	-
ENST00000838575.1	-	440	No protein	-	lncRNA	-	-
ENST00000424101.6	-	439	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000838523.1	-	427	No protein	-	lncRNA	-	-
ENST00000838583.1	-	403	No protein	-	lncRNA	-	-
ENST00000838550.1	-	379	No protein	-	lncRNA	-	-
ENST00000838556.1	-	379	No protein	-	lncRNA	-	-
ENST00000838549.1	-	371	No protein	-	lncRNA	-	-
ENST00000838589.1	-	366	No protein	-	lncRNA	-	-
ENST00000838590.1	-	271	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,555 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000415246.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000415246.3

Summary

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Transcript: ENST00000415246.3

Summary

About Us

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