Transcript: ENST00000414157.3 ITGB1-DT-201

Description

ITGB1 divergent transcript [Source:HGNC Symbol;Acc:HGNC:53718]

Gene Synonyms

LINCIN

Location

Chromosome 10: 32,982,547-33,082,102 forward strand.

About this transcript

This transcript has 3 exons and maps to 336 oligo probes.

Gene

This transcript is a product of gene ENSG00000229656.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000821378.1	ITGB1-DT-208	927	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659846.1	ITGB1-DT-203	2642	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821383.1	ITGB1-DT-213	1592	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666298.2	ITGB1-DT-204	1544	No protein	-	lncRNA	-	-
ENST00000821380.1	ITGB1-DT-210	1499	No protein	-	lncRNA	-	-
ENST00000821382.1	ITGB1-DT-212	1499	No protein	-	lncRNA	-	-
ENST00000821381.1	ITGB1-DT-211	1479	No protein	-	lncRNA	-	-
ENST00000821386.1	ITGB1-DT-216	1460	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000691671.2	ITGB1-DT-206	1419	No protein	-	lncRNA	-	-
ENST00000450890.6	ITGB1-DT-202	1381	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000821385.1	ITGB1-DT-215	1252	No protein	-	lncRNA	-	-
ENST00000688627.2	ITGB1-DT-205	1242	No protein	-	lncRNA	-	-
ENST00000821402.1	ITGB1-DT-232	1187	No protein	-	lncRNA	-	-
ENST00000700951.2	ITGB1-DT-207	1146	No protein	-	lncRNA	-	-
ENST00000821392.1	ITGB1-DT-222	1141	No protein	-	lncRNA	-	-
ENST00000821393.1	ITGB1-DT-223	1130	No protein	-	lncRNA	-	-
ENST00000821395.1	ITGB1-DT-225	1103	No protein	-	lncRNA	-	-
ENST00000821407.1	ITGB1-DT-237	1063	No protein	-	lncRNA	-	-
ENST00000414157.3	ITGB1-DT-201	1040	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000821391.1	ITGB1-DT-221	1032	No protein	-	lncRNA	-	-
ENST00000821397.1	ITGB1-DT-227	1015	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821396.1	ITGB1-DT-226	982	No protein	-	lncRNA	-	-
ENST00000821387.1	ITGB1-DT-217	973	No protein	-	lncRNA	-	-
ENST00000821398.1	ITGB1-DT-228	932	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821384.1	ITGB1-DT-214	926	No protein	-	lncRNA	-	-
ENST00000821408.1	ITGB1-DT-238	926	No protein	-	lncRNA	-	-
ENST00000821400.1	ITGB1-DT-230	914	No protein	-	lncRNA	-	-
ENST00000821394.1	ITGB1-DT-224	896	No protein	-	lncRNA	-	-
ENST00000821388.1	ITGB1-DT-218	887	No protein	-	lncRNA	-	-
ENST00000821401.1	ITGB1-DT-231	887	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821399.1	ITGB1-DT-229	769	No protein	-	lncRNA	-	-
ENST00000821379.1	ITGB1-DT-209	756	No protein	-	lncRNA	-	-
ENST00000821389.1	ITGB1-DT-219	739	No protein	-	lncRNA	-	-
ENST00000821390.1	ITGB1-DT-220	733	No protein	-	lncRNA	-	-
ENST00000821405.1	ITGB1-DT-235	570	No protein	-	lncRNA	-	-
ENST00000821406.1	ITGB1-DT-236	514	No protein	-	lncRNA	-	-
ENST00000821404.1	ITGB1-DT-234	506	No protein	-	lncRNA	-	-
ENST00000821403.1	ITGB1-DT-233	450	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,040 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000414157.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000414157.3 ITGB1-DT-201

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Transcript: ENST00000414157.3 ITGB1-DT-201

Summary

About Us

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