Transcript: ENST00000400946.3 LINC01139-201

Description

long intergenic non-protein coding RNA 1139 [Source:HGNC Symbol;Acc:HGNC:27924]

Gene Synonyms

LINK-A, TCONS_00000027

Location

Chromosome 1: 238,480,372-238,486,053 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 2359 variant alleles and maps to 213 oligo probes.

Gene

This transcript is a product of gene ENSG00000215808.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000649127.1	LINC01139-204	1061	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000649681.1	LINC01139-206	5583	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000657655.1	LINC01139-207	1585	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400946.3	LINC01139-201	1579	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000648241.1	LINC01139-203	1536	No protein	-	lncRNA	-	-
ENST00000648188.1	LINC01139-202	1450	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000649385.1	LINC01139-205	1430	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,579 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000400946.3

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000400946.3 LINC01139-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000400946.3 LINC01139-201

Summary

About Us

Get help

Our sister sites

Follow us