Transcript: ENST00000399206.4 LINC01588-201

Description

long intergenic non-protein coding RNA 1588 [Source:HGNC Symbol;Acc:HGNC:27503]

Gene Synonyms

C14ORF182

Location

Chromosome 14: 49,981,712-50,007,520 reverse strand.

About this transcript

This transcript has 4 exons and maps to 248 oligo probes.

Gene

This transcript is a product of gene ENSG00000214900.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000635379.2	LINC01588-217	2168	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000529902.2	LINC01588-203	4279	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000528300.5	LINC01588-202	3208	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000557142.6	LINC01588-213	3167	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000399206.4	LINC01588-201	2686	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000556913.1	LINC01588-212	2460	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000701026.2	LINC01588-224	2450	No protein	-	lncRNA	-	-
ENST00000530176.5	LINC01588-204	2444	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000554129.1	LINC01588-208	2301	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000769283.1	LINC01588-313	2287	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769205.1	LINC01588-235	2198	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769280.1	LINC01588-310	2064	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769279.1	LINC01588-309	1938	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769281.1	LINC01588-311	1882	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769285.1	LINC01588-315	1836	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769199.1	LINC01588-229	1454	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769284.1	LINC01588-314	1444	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769220.1	LINC01588-250	1361	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769218.1	LINC01588-248	1322	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000533506.5	LINC01588-205	1316	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000769262.1	LINC01588-292	1305	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769219.1	LINC01588-249	1304	No protein	-	lncRNA	-	-
ENST00000769260.1	LINC01588-290	1215	No protein	-	lncRNA	-	-
ENST00000769228.1	LINC01588-258	1195	No protein	-	lncRNA	-	-
ENST00000685750.2	LINC01588-220	1194	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701065.1	LINC01588-225	1164	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769253.1	LINC01588-283	1137	No protein	-	lncRNA	-	-
ENST00000769233.1	LINC01588-263	1136	No protein	-	lncRNA	-	-
ENST00000769206.1	LINC01588-236	1132	No protein	-	lncRNA	-	-
ENST00000769286.1	LINC01588-316	1127	No protein	-	lncRNA	-	-
ENST00000658223.1	LINC01588-219	1113	No protein	-	lncRNA	-	-
ENST00000769282.1	LINC01588-312	1070	No protein	-	lncRNA	-	-
ENST00000769207.1	LINC01588-237	1068	No protein	-	lncRNA	-	-
ENST00000553914.7	LINC01588-207	1063	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000701890.2	LINC01588-227	1060	No protein	-	lncRNA	-	-
ENST00000769236.1	LINC01588-266	1051	No protein	-	lncRNA	-	-
ENST00000701392.2	LINC01588-226	1048	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000603228.3	LINC01588-214	1036	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000769204.1	LINC01588-234	1011	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769298.1	LINC01588-328	1006	No protein	-	lncRNA	-	-
ENST00000769276.1	LINC01588-306	1002	No protein	-	lncRNA	-	-
ENST00000769208.1	LINC01588-238	983	No protein	-	lncRNA	-	-
ENST00000769263.1	LINC01588-293	978	No protein	-	lncRNA	-	-
ENST00000623502.1	LINC01588-216	975	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000769249.1	LINC01588-279	974	No protein	-	lncRNA	-	-
ENST00000769267.1	LINC01588-297	970	No protein	-	lncRNA	-	-
ENST00000690038.1	LINC01588-222	960	No protein	-	lncRNA	-	-
ENST00000769201.1	LINC01588-231	955	No protein	-	lncRNA	-	-
ENST00000769245.1	LINC01588-275	954	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655269.2	LINC01588-218	951	No protein	-	lncRNA	-	-
ENST00000769271.1	LINC01588-301	940	No protein	-	lncRNA	-	-
ENST00000769269.1	LINC01588-299	938	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000700829.2	LINC01588-223	930	No protein	-	lncRNA	-	-
ENST00000769266.1	LINC01588-296	926	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769242.1	LINC01588-272	916	No protein	-	lncRNA	-	-
ENST00000769209.1	LINC01588-239	908	No protein	-	lncRNA	-	-
ENST00000769232.1	LINC01588-262	908	No protein	-	lncRNA	-	-
ENST00000769202.1	LINC01588-232	906	No protein	-	lncRNA	-	-
ENST00000556434.5	LINC01588-211	892	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000769256.1	LINC01588-286	890	No protein	-	lncRNA	-	-
ENST00000769261.1	LINC01588-291	883	No protein	-	lncRNA	-	-
ENST00000769203.1	LINC01588-233	882	No protein	-	lncRNA	-	-
ENST00000769257.1	LINC01588-287	881	No protein	-	lncRNA	-	-
ENST00000769248.1	LINC01588-278	865	No protein	-	lncRNA	-	-
ENST00000769223.1	LINC01588-253	863	No protein	-	lncRNA	-	-
ENST00000769234.1	LINC01588-264	855	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769291.1	LINC01588-321	845	No protein	-	lncRNA	-	-
ENST00000769200.1	LINC01588-230	833	No protein	-	lncRNA	-	-
ENST00000769247.1	LINC01588-277	824	No protein	-	lncRNA	-	-
ENST00000769222.1	LINC01588-252	823	No protein	-	lncRNA	-	-
ENST00000769255.1	LINC01588-285	804	No protein	-	lncRNA	-	-
ENST00000769231.1	LINC01588-261	791	No protein	-	lncRNA	-	-
ENST00000769292.1	LINC01588-322	775	No protein	-	lncRNA	-	-
ENST00000769226.1	LINC01588-256	761	No protein	-	lncRNA	-	-
ENST00000701948.2	LINC01588-228	757	No protein	-	lncRNA	-	-
ENST00000769229.1	LINC01588-259	747	No protein	-	lncRNA	-	-
ENST00000769237.1	LINC01588-267	747	No protein	-	lncRNA	-	-
ENST00000769302.1	LINC01588-332	747	No protein	-	lncRNA	-	-
ENST00000769216.1	LINC01588-246	744	No protein	-	lncRNA	-	-
ENST00000769212.1	LINC01588-242	733	No protein	-	lncRNA	-	-
ENST00000769225.1	LINC01588-255	727	No protein	-	lncRNA	-	-
ENST00000769239.1	LINC01588-269	724	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769246.1	LINC01588-276	721	No protein	-	lncRNA	-	-
ENST00000769295.1	LINC01588-325	715	No protein	-	lncRNA	-	-
ENST00000769215.1	LINC01588-245	705	No protein	-	lncRNA	-	-
ENST00000603474.3	LINC01588-215	703	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000769303.1	LINC01588-333	703	No protein	-	lncRNA	-	-
ENST00000769217.1	LINC01588-247	695	No protein	-	lncRNA	-	-
ENST00000769224.1	LINC01588-254	690	No protein	-	lncRNA	-	-
ENST00000769251.1	LINC01588-281	690	No protein	-	lncRNA	-	-
ENST00000556130.1	LINC01588-210	685	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000769250.1	LINC01588-280	685	No protein	-	lncRNA	-	-
ENST00000769243.1	LINC01588-273	684	No protein	-	lncRNA	-	-
ENST00000686177.3	LINC01588-221	676	No protein	-	lncRNA	-	-
ENST00000769213.1	LINC01588-243	673	No protein	-	lncRNA	-	-
ENST00000769297.1	LINC01588-327	669	No protein	-	lncRNA	-	-
ENST00000769214.1	LINC01588-244	667	No protein	-	lncRNA	-	-
ENST00000769290.1	LINC01588-320	663	No protein	-	lncRNA	-	-
ENST00000769294.1	LINC01588-324	633	No protein	-	lncRNA	-	-
ENST00000769211.1	LINC01588-241	620	No protein	-	lncRNA	-	-
ENST00000769265.1	LINC01588-295	619	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769277.1	LINC01588-307	613	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769299.1	LINC01588-329	609	No protein	-	lncRNA	-	-
ENST00000769230.1	LINC01588-260	592	No protein	-	lncRNA	-	-
ENST00000769278.1	LINC01588-308	590	No protein	-	lncRNA	-	-
ENST00000769289.1	LINC01588-319	588	No protein	-	lncRNA	-	-
ENST00000769221.1	LINC01588-251	576	No protein	-	lncRNA	-	-
ENST00000769268.1	LINC01588-298	576	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769304.1	LINC01588-334	574	No protein	-	lncRNA	-	-
ENST00000769272.1	LINC01588-302	556	No protein	-	lncRNA	-	-
ENST00000769254.1	LINC01588-284	555	No protein	-	lncRNA	-	-
ENST00000769258.1	LINC01588-288	550	No protein	-	lncRNA	-	-
ENST00000769227.1	LINC01588-257	545	No protein	-	lncRNA	-	-
ENST00000556019.2	LINC01588-209	534	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000769235.1	LINC01588-265	533	No protein	-	lncRNA	-	-
ENST00000769241.1	LINC01588-271	530	No protein	-	lncRNA	-	-
ENST00000769264.1	LINC01588-294	529	No protein	-	lncRNA	-	-
ENST00000769210.1	LINC01588-240	512	No protein	-	lncRNA	-	-
ENST00000769270.1	LINC01588-300	505	No protein	-	lncRNA	-	-
ENST00000769240.1	LINC01588-270	493	No protein	-	lncRNA	-	-
ENST00000769301.1	LINC01588-331	488	No protein	-	lncRNA	-	-
ENST00000769300.1	LINC01588-330	485	No protein	-	lncRNA	-	-
ENST00000769244.1	LINC01588-274	475	No protein	-	lncRNA	-	-
ENST00000769252.1	LINC01588-282	447	No protein	-	lncRNA	-	-
ENST00000553463.2	LINC01588-206	444	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000769273.1	LINC01588-303	434	No protein	-	lncRNA	-	-
ENST00000769293.1	LINC01588-323	433	No protein	-	lncRNA	-	-
ENST00000769296.1	LINC01588-326	429	No protein	-	lncRNA	-	-
ENST00000769287.1	LINC01588-317	422	No protein	-	lncRNA	-	-
ENST00000769288.1	LINC01588-318	387	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769238.1	LINC01588-268	370	No protein	-	lncRNA	-	-
ENST00000769259.1	LINC01588-289	344	No protein	-	lncRNA	-	-
ENST00000769275.1	LINC01588-305	324	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769274.1	LINC01588-304	299	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,686 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000399206.4

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000399206.4 LINC01588-201

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Transcript: ENST00000399206.4 LINC01588-201

Summary

About Us

Get help

Our sister sites

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