Transcript: ENST00000396721.6 SDR16C5-202

Description

short chain dehydrogenase/reductase family 16C member 5 [Source:HGNC Symbol;Acc:HGNC:30311]

Gene Synonyms

EPHD-2, RDH-E2, RDHE2

Location

Chromosome 8: 56,300,010-56,320,175 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 11 domains and features, is associated with 9162 variant alleles and maps to 414 oligo probes.

Gene

This transcript is a product of gene ENSG00000170786.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000303749.8	SDR16C5-201	2536	309aa	ENSP00000307607.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6167	Q8N3Y7-1	NM_138969.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000396721.6	SDR16C5-202	2399	265aa	ENSP00000379947.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS83295	Q8N3Y7-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000522671.1	SDR16C5-203	1988	318aa	ENSP00000431010.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS83296	G3V145	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,399 bps, Translation length: 265 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N3Y7

CCDS

This transcript is a member of the Human CCDS set: CCDS83295

Transcript Support Level (TSL)

TSL:1

Version

ENST00000396721.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000396721.6 SDR16C5-202

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Transcript: ENST00000396721.6 SDR16C5-202

Summary

About Us

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