Transcript: ENST00000396403.9 ZNF813-201

Description

zinc finger protein 813 [Source:HGNC Symbol;Acc:HGNC:33257]

Gene Synonyms

FLJ16542

Location

Chromosome 19: 53,467,733-53,496,255 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 83 domains and features, is associated with 14952 variant alleles and maps to 634 oligo probes.

Gene

This transcript is a product of gene ENSG00000198346.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000396403.9	ZNF813-201	6153	617aa	ENSP00000379684.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46172	Q6ZN06	NM_001004301.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000490956.1	ZNF813-203	559	146aa	ENSP00000418289.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EU70	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000468450.5	ZNF813-202	535	125aa	ENSP00000419821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZ01	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 6,153 bps, Translation length: 617 residues

MANE

This MANE Select transcript contains ENSP00000379684 and matches to NM_001004301.4 and NP_001004301.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZN06

CCDS

This transcript is a member of the Human CCDS set: CCDS46172

Transcript Support Level (TSL)

TSL:3

Version

ENST00000396403.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000396403.9 ZNF813-201

Summary

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Transcript: ENST00000396403.9 ZNF813-201

Summary

About Us

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