Human (GRCh38.p14)
Description

nephrocystin 4 [Source:HGNC Symbol;Acc:HGNC:19104]

Gene Synonyms

KIAA0673, POC10, SLSN4

Location
About this transcript

This transcript has 30 exons, is annotated with 12 domains and features, is associated with 62039 variant alleles and maps to 791 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000378156.9NPHP4-20149551426aaENSP00000367398.4
 
Protein coding
CCDS44052O75161-1 NM_015102.5MANE SelectEnsembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS P3TSL:1
ENST00000955275.1NPHP4-23456451425aaENSP00000625334.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000955274.1NPHP4-23352201389aaENSP00000625333.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000955272.1NPHP4-23151321390aaENSP00000625331.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000892402.1NPHP4-21950691425aaENSP00000562461.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000955266.1NPHP4-22549771412aaENSP00000625325.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT2
ENST00000923564.1NPHP4-22349721425aaENSP00000593623.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000955267.1NPHP4-22649721423aaENSP00000625326.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT2
ENST00000892397.1NPHP4-21449711425aaENSP00000562456.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000923565.1NPHP4-22449371426aaENSP00000593624.1
 
Protein coding
CCDS44052--GENCODE BasicAPPRIS P3
ENST00000955271.1NPHP4-23049291422aaENSP00000625330.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000955273.1NPHP4-23249191421aaENSP00000625332.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000892399.1NPHP4-21649121411aaENSP00000562458.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000955269.1NPHP4-22848971411aaENSP00000625328.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000892395.1NPHP4-21248831390aaENSP00000562454.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT2
ENST00000923561.1NPHP4-22048651426aaENSP00000593620.1
 
Protein coding
CCDS44052--GENCODE BasicAPPRIS P3
ENST00000923562.1NPHP4-22148551425aaENSP00000593621.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000955268.1NPHP4-22748521389aaENSP00000625327.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT2
ENST00000892396.1NPHP4-21348261377aaENSP00000562455.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000923563.1NPHP4-22248151366aaENSP00000593622.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000892398.1NPHP4-21548071375aaENSP00000562457.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000892400.1NPHP4-21748061378aaENSP00000562459.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000892401.1NPHP4-21847941376aaENSP00000562460.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000955270.1NPHP4-22947591365aaENSP00000625329.1
 
Protein coding
--GENCODE BasicAPPRIS ALT2
ENST00000622020.4NPHP4-2113004911aaENSP00000481831.2
 
Protein coding
O75161-2 -GENCODE PrimaryGENCODE BasicAPPRIS ALT2TSL:5
ENST00000489180.6NPHP4-2095548911aaENSP00000423747.1
 
Nonsense mediated decay
O75161-2 -TSL:2
ENST00000378169.7NPHP4-2034213262aaENSP00000367411.3
 
Nonsense mediated decay
D6RA06 -TSL:1
ENST00000466897.1NPHP4-2051192138aaENSP00000425745.1
 
Nonsense mediated decay
H0YA08 -TSL:1CDS 5' incomplete
ENST00000478423.6NPHP4-2084467No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000378161.5NPHP4-2024370No protein-
 
Retained intron
--TSL:2
ENST00000460696.1NPHP4-2043967No protein-
 
Retained intron
--TSL:1
ENST00000470763.1NPHP4-2073156No protein-
 
Retained intron
--TSL:2
ENST00000468253.1NPHP4-206781No protein-
 
Retained intron
--TSL:2
ENST00000506941.1NPHP4-210570No protein-
 
Retained intron
--TSL:4
Statistics

Exons: 30, Coding exons: 29, Transcript length: 4,955 bps, Translation length: 1,426 residues

MANE

This MANE Select transcript contains ENSP00000367398 and matches to NM_015102.5 and NP_055917.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75161

CCDS

This transcript is a member of the Human CCDS set: CCDS44052

Transcript Support Level (TSL)

TSL:1

Version

ENST00000378156.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

non canonical polymorphism [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.