Transcript: ENST00000377727.2 H4C8-201

Description

H4 clustered histone 8 [Source:HGNC Symbol;Acc:HGNC:4788]

Gene Synonyms

H4/H, H4FH, HIST1H4H

Location

Chromosome 6: 26,285,126-26,285,534 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 763 domains and features, is associated with 572 variant alleles and maps to 159 oligo probes.

Gene

This transcript is a product of gene ENSG00000158406.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000377727.2	H4C8-201	409	103aa	ENSP00000366956.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4604	B2R4R0 P62805	NM_003543.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000634956.1	H4C8-203	2163	103aa	ENSP00000489567.1	Nonsense mediated decay	CCDS4604	B2R4R0 P62805	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000634560.1	H4C8-202	1034	103aa	ENSP00000489319.1	Nonsense mediated decay	CCDS4604	B2R4R0 P62805	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 409 bps, Translation length: 103 residues

MANE

This MANE Select transcript contains ENSP00000366956 and matches to NM_003543.4 and NP_003534.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62805

CCDS

This transcript is a member of the Human CCDS set: CCDS4604

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000377727.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000377727.2 H4C8-201

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Transcript: ENST00000377727.2 H4C8-201

Summary

About Us

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